PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA010868-PA | ||||||||
Common Name | OsI_11283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 32405.3 Da PI: 9.3271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 103 | 155 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++g+ BGIOSGA010868-PA 103 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAALKFRGA 155 57****************988532...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.045 | 1 | 51 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.014 | 18 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-7 | 24 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-6 | 24 | 52 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.6E-6 | 88 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.58E-12 | 103 | 164 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-18 | 103 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-11 | 103 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-32 | 104 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-19 | 104 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.48 | 104 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-6 | 144 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MVVKTLTTTT EQLDVLMRDR CSGYDIEDKA ARAYDLAALK YWGANATTNF PKESYVKEIE 60 EMQKMSKQEV VASLRRKSSG FSRGASIYRG VTRKSSGFSR GASIYRGVTR HHQHGRWQAR 120 IGRVAGNKDL YLGTFATEEE AAEAYDVAAL KFRGANAVTN FEPSRYNLEA ISQSDLPISV 180 SGRRHNSSSN SNNPAPEAGG QITLMSSPPI SQQSSSAPPY LIHNLLQFQP CGPPYAPPPP 240 PPPPPPQALP LPGSYNFAEP VGFYWPYGDG EEQKVQLNSN MVGMASGGFL RLANAAN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.56314 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115452652 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also expressed in roots, seedlings, and siliques, and, at low levels, in leaves. {ECO:0000269|PubMed:12172019, ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109839 | 0.0 | AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629274.1 | 1e-133 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q6PQQ4 | 9e-70 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | B8AN05 | 0.0 | B8AN05_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G15980.1 | 1e-135 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65510.1 | 2e-62 | AINTEGUMENTA-like 7 |