PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA009581-PA

Common Name

OsI_14031

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 480aa MW: 51684.6 Da PI: 8.7831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA009581-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.3	5.6e-27	276	409	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatg 87 pG+rF Ptd+el+ ++Lk+k + ++ ++++ + ik++d++k++ +L+ k+ + wy Fs+r++ +++g r+ r +t+ gyWk+ BGIOSGA009581-PA 276 PGVRFTPTDQELIIHFLKPKYNLRDaMPTNIIvIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARgikTTAVGYWKSNS 368 9*****************9988875554445**********9534322334459*************996534779*** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +v++ +ge++g ++L++ g++p+g+ t+W m+eyr+ BGIOSGA009581-PA 369 AEADVVDDDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 409 *************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.9	274	436	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-32	275	435	IPR003441	NAC domain
Pfam	PF02365	4.5E-15	276	409	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MAAINPVAGE VAAATAKAPP PAMATVRAPL PANHYSPYHS ASAAGSYAAN TQSTSSPVSP 60 ASPAMISSSS SSLPPQQQRT WQPQPTTFSQ ANPGHAYQQD HLPAVAGRRF FPPPAMQMQY 120 YHQQPDGVAM VGSGHPMAAP VHSSPLATTS GSNHAVVPDA PPQEPAKRRR RNTAAAATAR 180 RGRGRPRGAT ASSAHSAPPP QQQQQQPTTS APAITAQRND DVNQEDDNQS SKNSAEEAVV 240 VDGGEPPAAT SALAIVPRHG DVGDADRPVS PYSDIPGVRF TPTDQELIIH FLKPKYNLRD 300 AMPTNIIVIK QLDVCKLNLD ELHGDLGLGK SLDGAWYVFS PRSRYKERGV RPARGIKTTA 360 VGYWKSNSAE ADVVDDDGEV IGRVNSLTLA LGHQPRGKAT HWRMKEYRIP QFQIPLGQED 420 SNRLLDEWVL CKLYHSFAYK QKGKCKVHEE GSKSDRGVQD LSIDDDRKTC DIEANKPNGV

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MAAINPVAGE VAAATAKAPP PAMATVRAPL PANHYSPYHS ASAAGSYAAN TQSTSSPVSP  60
ASPAMISSSS SSLPPQQQRT WQPQPTTFSQ ANPGHAYQQD HLPAVAGRRF FPPPAMQMQY  120
YHQQPDGVAM VGSGHPMAAP VHSSPLATTS GSNHAVVPDA PPQEPAKRRR RNTAAAATAR  180
RGRGRPRGAT ASSAHSAPPP QQQQQQPTTS APAITAQRND DVNQEDDNQS SKNSAEEAVV  240
VDGGEPPAAT SALAIVPRHG DVGDADRPVS PYSDIPGVRF TPTDQELIIH FLKPKYNLRD  300
AMPTNIIVIK QLDVCKLNLD ELHGDLGLGK SLDGAWYVFS PRSRYKERGV RPARGIKTTA  360
VGYWKSNSAE ADVVDDDGEV IGRVNSLTLA LGHQPRGKAT HWRMKEYRIP QFQIPLGQED  420
SNRLLDEWVL CKLYHSFAYK QKGKCKVHEE GSKSDRGVQD LSIDDDRKTC DIEANKPNGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-20	259	434	3	163	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-20	259	434	3	163	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-20	259	434	3	163	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-20	259	434	3	163	NO APICAL MERISTEM PROTEIN
4dul_A	8e-20	259	434	3	163	NAC domain-containing protein 19
4dul_B	8e-20	259	434	3	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137507	0.0	AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2XN98	0.0	A2XN98_ORYSI; Uncharacterized protein
STRING	ONIVA03G40170.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13130	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-23	NAC domain containing protein 25