PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA008149-PA | ||||||||
Common Name | OsI_07096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 29406 Da PI: 9.113 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 29 | 125 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k l+psd ++ +l +p ++++++g ++led++g + W +++ +k+ g + ltkGW+ Fv+++gLk+gD+ BGIOSGA008149-PA 29 FEKFLMPSDLCSNtEWLGIPEEHVRKFG--------MMLEDRDGysviffqdgvvpgKLWCFRY--WKSNGVHGLTKGWRCFVREKGLKAGDT 111 89*******9988799********9997........888888888888888889999*******..*************************** PP EEEEE-SSSEE..EE CS B3 80 vvFkldgrsefelvv 94 + F + g+ +++l++ BGIOSGA008149-PA 112 ISFFR-GSACGRLFI 125 **984.336665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 24 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-18 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.63E-19 | 28 | 128 | No hit | No description |
SMART | SM01019 | 1.1E-7 | 29 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-13 | 29 | 126 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.673 | 30 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAASLPLSAA IVGAEESVDK EVLEMEYLFE KFLMPSDLCS NTEWLGIPEE HVRKFGMMLE 60 DRDGYSVIFF QDGVVPGKLW CFRYWKSNGV HGLTKGWRCF VREKGLKAGD TISFFRGSAC 120 GRLFICCRLG TRATFASSST LHHGFSMPPP PARPLVGLES GMLARDVPSL GQARLHDGNQ 180 DGGGAPSRHV PSLGRRVEAQ LSRVSSRRKR RTMKHSIPEP TIETPPILES MFLIAAPPAV 240 KCLRLFGVNI YVLPVSSSGQ PKQESSP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.70985 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116012053 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625111.1 | 0.0 | B3 domain-containing protein Os02g0455800 | ||||
Swissprot | Q6K3B2 | 0.0 | Y2558_ORYSJ; B3 domain-containing protein Os02g0455800 | ||||
TrEMBL | A2X4H1 | 0.0 | A2X4H1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G16010.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0455800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 5e-18 | B3 family protein |