PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007863-PA
Common NameOsI_06510
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 545aa    MW: 58969.1 Da    PI: 6.1398
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007863-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.9e-31118171255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  BGIOSGA007863-PA 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601114174IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-29114172IPR009057Homeodomain-like
SuperFamilySSF466895.38E-14117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-22118173IPR006447Myb domain, plants
PfamPF002499.6E-9119170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MKEKEVLVEI VEDDELKRSI GRNQLDLNEE VMDVESEEGE VGDDEDDEDE EDDDDDDDGG  60
STTDVAGSRS SSNNSSTNNV SESKLKGDKD SGGGRLEGIN GGEQRVPSVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHEGRQ  180
IRGAIASVFS PMDFHLMRGD RRFHDMLLQR AAALSSSRQE HGGFFSSRSG GGGGGLPPEA  240
SRLYGLLQHR QSPAIATMQT FDFKNSSFRN QEWSFSFNHQ RKETMNPSSS SSTTAAIRRW  300
PSAAGAVADV AGERQRLAER FGYYTGNGGA SSTSLPLITR AAMAAPPPMF AAAVAPPGRD  360
HHRLPFGWHA GGGGGCGGNK NRSSSDPVVI DEALDSRRLE HQQKHVEQPR TTPTPTTTPA  420
GKRPPEWSPP DLQLTLSPTT APAAADGGGA KRSKTSTTTT NTTAAISGEQ EAEKNMDRCK  480
NKLSISLSLS PPAAAAAAAN FSSMDLSMEQ QKQKQEKTTI GSSEEEAGDL GQSTLDLTMS  540
IRALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625548.10.0uncharacterized protein LOC107275964
TrEMBLA2X2U50.0A2X2U5_ORYSI; Uncharacterized protein
STRINGORUFI02G10190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.18e-35G2-like family protein