PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA003804-PA | ||||||||
Common Name | OsI_02515 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 26865 Da PI: 6.0269 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 40 | 137 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l++lkae BGIOSGA003804-PA 40 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARLKAE 132 7******************************************************************************************** PP DUF260 94 lallk 98 l+++k BGIOSGA003804-PA 133 LDAVK 137 *9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.781 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-35 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGDEEAGPSS SGHSSPTSNT STTPPPQPPP PPPPPPHPQA CAACKHQRRR CTPECRLARY 60 FPANQPARFR NAHRLFGIKN ILRVMASASE ELRDDAMKSV VYESDAWVID PVGGAAGIVK 120 GLSQELARLK AELDAVKGLI ELHRRAAAQQ QQQPPVAVAS NGGFLPSPPP PPQGQQQLLF 180 LPPPPPTMML QDGHCDDETV EDDYLVDPPA VDAAAATSTA PERHGDGHAP TANVKEEGNV 240 DHTSSMSFRD R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-22 | 41 | 149 | 12 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-22 | 41 | 149 | 12 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638299.1 | 1e-94 | LOB domain-containing protein 11 | ||||
TrEMBL | A2WRN1 | 0.0 | A2WRN1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G22730.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15829 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-27 | LOB domain-containing protein 22 |