PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA003800-PA
Common NameOsI_02503
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 383aa    MW: 41774.5 Da    PI: 6.0876
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA003800-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.24.6e-32751692103
                       HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                       F+ k+ye++ d++++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  BGIOSGA003800-PA  75 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKH 158
                       9********************655679*****************************************99.........************** PP

                       XXXXXXXXXXX CS
      HSF_DNA-bind  93 llekikrkkse 103
                       ll++ikr++ +
  BGIOSGA003800-PA 159 LLKNIKRRRVS 169
                       *******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.14E-3071166IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-3471166IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5371166IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2875166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-177598IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-17115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340116140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-17128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASSSSSSLC RLLIPRPTTR RFSGGGGEGG MAAAAPVKRE VKPEAGEGWG GGDLGVVPPP  60
PRPMEGLGEA GPAPFVAKTY EMVADAATDA VVSWGPGGSG ASFVVWDPHA LAAGVLPRFF  120
KHANFSSFVR QLNTYGFRKV TPDRWEFANE AFLAGQKHLL KNIKRRRVSK PLVDSQLRNK  180
ASVVFGQPEA PGEVVSLKRD RAALRAEVIM LKQQYNACKS QLIAMEEMVR NIERRQQQTI  240
GFFAKVLTNP AFVQQVLLNY VNKNGLRGAA KRQRLMENEE QHADSPLNKG MEAASVMEAD  300
VSPGSTGCGT VGKVETTPMC NFQNIENMCD DVWEELDALP ETGMEQEEKA GIGSFDVEEF  360
VGRPCGWVDD CPYLVEPMQF VEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-235016610129Heat shock factor protein 1
5d5v_B5e-235016610129Heat shock factor protein 1
5d5v_D5e-235016610129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165LKNIKRR
2163167KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.519160.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329742890.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642710.0AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631502.10.0heat stress transcription factor A-6a
SwissprotQ657C00.0HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLA2WRL90.0A2WRL9_ORYSI; Uncharacterized protein
STRINGORUFI01G22600.10.0(Oryza rufipogon)
STRINGOS01T0571300-010.0(Oryza sativa)
STRINGONIVA01G22600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-72heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]