PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001962-PA
Common NameOsI_01241
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 385aa    MW: 40902.4 Da    PI: 8.5025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001962-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-102349127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++rtG C yG++C+++H++
  BGIOSGA001962-PA 23 PGEADCVYYLRTGACGYGENCRYNHPR 49
                      57899********************96 PP
2zf-CCCH37.63.7e-127399127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++++GtCk+G++Ck+ H++
  BGIOSGA001962-PA 73 PGQPVCEYYMKNGTCKFGSNCKYDHPR 99
                      5789*********************96 PP
3zf-CCCH33.76e-11118143227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C ++ +tG+Ck+G++CkF+H++
  BGIOSGA001962-PA 118 GEKDCTYYVKTGHCKFGSTCKFHHPE 143
                       5789********************96 PP
4zf-CCCH28.91.9e-09267291327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +C ++ + G+Ck+G++CkF H++
  BGIOSGA001962-PA 267 SQPCAYYTQHGFCKFGPTCKFDHPM 291
                       679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-62249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2112250IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-82449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-62651IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-42849IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-77299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.76572100IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-107499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-675100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-577100IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5116143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502116144IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8118143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4122142IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69264292IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6266294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5268289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGLGGGGGGG GEAVAAGRLP ERPGEADCVY YLRTGACGYG ENCRYNHPRD RAAAAVLNGG  60
GKTTHSAEYP ERPGQPVCEY YMKNGTCKFG SNCKYDHPRE GSVQAVMLNS SGYPLRSGEK  120
DCTYYVKTGH CKFGSTCKFH HPEIGGVSET PNMYPPVQPQ PISSSHPYQH LAGWQMGRPP  180
VLPGSFLSGS YPPMMLPSTV VPMQGWNPYI SPVNQVASAG GHQTVQAGRF MAYRTKGLLL  240
QSLMAYLNTP KSNCMLSPLG LPLRPGSQPC AYYTQHGFCK FGPTCKFDHP MGTLSYSPSA  300
SSITDLPIAP YPLNYAVAPV APPSSSSDLR PEYLLTKEFS ANQSASPGTT CGPAGAMLKA  360
YAPHMLIRPQ TSGAGGMVTT HGGEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.90290.0callus| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329839430.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLB8AC880.0B8AC88_ORYSI; Uncharacterized protein
STRINGOGLUM01G11340.10.0(Oryza glumipatula)
STRINGORUFI01G10840.10.0(Oryza rufipogon)
STRINGOS01T0257400-010.0(Oryza sativa)
STRINGONIVA01G12440.10.0(Oryza nivara)
STRINGORGLA01G0090000.10.0(Oryza glaberrima)
STRINGOBART01G09920.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-81C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]