PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA001354-PA | ||||||||
Common Name | OsI_02549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YB | ||||||||
Protein Properties | Length: 68aa MW: 7825.14 Da PI: 4.5339 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 52.5 | 1.2e-16 | 3 | 65 | 15 | 76 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala.tlGf 76 +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al l f BGIOSGA001354-PA 3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQlCLSF 65 89****************************************************999623555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.48E-20 | 2 | 60 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-18 | 3 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.1E-22 | 3 | 60 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREDKKTI APEHVLRALQ 60 LCLSFPEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-20 | 3 | 68 | 23 | 86 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15617 | 3e-98 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18481619 | 3e-98 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464902 | 7e-96 | AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | CT830130 | 7e-96 | CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence. | |||
GenBank | CT841564 | 7e-96 | CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020259356.1 | 1e-36 | protein Dr1 homolog | ||||
Refseq | XP_020259357.1 | 1e-36 | protein Dr1 homolog | ||||
Swissprot | P49592 | 7e-35 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | B8AAQ3 | 1e-41 | B8AAQ3_ORYSI; Uncharacterized protein | ||||
STRING | OMERI08G11030.1 | 2e-35 | (Oryza meridionalis) | ||||
STRING | OPUNC08G12020.1 | 1e-35 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-37 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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