PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA001327-PA | ||||||||
Common Name | OsI_02614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 32587.3 Da PI: 8.6096 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 8.8e-29 | 147 | 206 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+ BGIOSGA001327-PA 147 VKDGCQWRKYGQKTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 206 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-30 | 135 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 140 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.209 | 142 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-35 | 147 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-25 | 148 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNTFTLFRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPDACQCHAS KKDEADAGNG 60 GGDGYLALAL RCAPAAGEPM VHPKRQRATT NSSSSSSICG EYGGGAAAAT VPAGHDDDDR 120 SCMITAASTA NRPGRVVLRT RCSAPTVKDG CQWRKYGQKT AKGNPWPRGY YRCTGAPGCP 180 VKKQVQRCNH DTSVLVTTYD GVHNHPITPY AAALPPSSSS SSSAAVAMLA SSSSSSTWSE 240 LQRAMPAAQS SWSQRNYPIQ ADVVAKAIWD PKFQATVAAA VASYVRDREQ SARVAGGKGA 300 GELFNLAPPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-24 | 135 | 209 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003300 | 0.0 | AP003300.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0700A11. | |||
GenBank | AP003492 | 0.0 | AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642021.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A2WRX7 | 0.0 | A2WRX7_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G23680.1 | 1e-164 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14319 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 6e-39 | WRKY DNA-binding protein 9 |