PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA000506-PA | ||||||||
Common Name | OsI_04396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 350aa MW: 37009.9 Da PI: 7.0263 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.7e-32 | 145 | 201 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h BGIOSGA000506-PA 145 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 201 6*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-31 | 141 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 142 | 203 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 144 | 203 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 146 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.174 | 146 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGDVLRAQAT ASAEEVAGGV WPCELDDHLI GELLGDDGLF VPAAEHPTLY YSFGAGSSAA 60 AAAAPCNGGG SADHERRPRP APAVSRDLCS VYSGPTIRDI EKALSSSASP RPPYPSGRRY 120 SSLYLVEAES KYTSKVRSCG GKMPADGYKW RKYGQKSIKN NPHPRSYYKC TSSRCSAKKH 180 VEKSTDDPEM LIVTYEGSHH HGPQPLLPPH IAQPPPPTSV VGFSAASGAG PPPSSPAAAA 240 RKRKNYVRAA FSPTTSEDDG DGAGRLRPEW PQDDGTSCDV AELRRRGDAE HAAPRRVATD 300 RSCDDGGGGG STSASSSVAR ADAATALSSD SPPTIWSCLD WPWSQETLFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 146 | 201 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 146 | 201 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 0.0 | WRKY transcription factor WRKY28 | ||||
TrEMBL | B8AC20 | 0.0 | B8AC20_ORYSI; Uncharacterized protein | ||||
STRING | OMERI01G33470.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 8e-24 | WRKY DNA-binding protein 49 |