PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YR3WS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 806aa    MW: 88865.6 Da    PI: 7.403
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YR3WSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24165266199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el
  Araip.YR3WS 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGENGEL 259
                  99****************************963.3445679************************************************..4499999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Araip.YR3WS 260 RLGIRRA 266
                  ****996 PP
2Auxin_resp119.72.4e-39291373182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k++k++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp+rWp+SkWr+L
  Araip.YR3WS 291 VANAISAKSMFHVFYSPRASHADFVVSYQKYAKSIKNPVTIGTRFKMKFEMDESPERRCtSGIVTGMSDLDPYRWPKSKWRCL 373
                  689********************************************************9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-44157276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40159276IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-23163265No hitNo description
PROSITE profilePS5086313.042165267IPR003340B3 DNA binding domain
SMARTSM010192.3E-24165267IPR003340B3 DNA binding domain
PfamPF023627.1E-22165266IPR003340B3 DNA binding domain
PfamPF065071.8E-33291373IPR010525Auxin response factor
PROSITE profilePS5174522.181678762IPR000270PB1 domain
SuperFamilySSF542771.32E-9680757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MEIDLNHAVT EVEKNATCNG GCHKEQATAS CVCCVPSSSS SSSSSSAVSS SSYLELWHAC  60
AGPLTSLPKK GNVVVYFPQG HLEQAASFSP FTPLEIPTHD LQPQIFCRVV NVQLLANKEN  120
DEVYTQVTLL PQAELAGMGK ELLEELGADE EGNGRTPTKT TPHMFCKTLT ASDTSTHGGF  180
SVPRRAAEDC FPPLDYKQQR PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ  240
KNLVSGDAVL FLRGENGELR LGIRRAVRPR NGLPESIVGN QSCYPNFLSS VANAISAKSM  300
FHVFYSPRAS HADFVVSYQK YAKSIKNPVT IGTRFKMKFE MDESPERRCT SGIVTGMSDL  360
DPYRWPKSKW RCLMVRWDED METNHQDRVS PWEIDPSASL PPLSMQCSPR LKKLRTGLQA  420
ASSSHLITGG TGFMDLEESV RSPKVLQGQE NTGFMSLYFG RDTVTKQPGF EISSPNHPNL  480
ASAGARKMTA AELMRVHPPT YAGFVEPNNR FPRVLQGQEI CPLRSLTGKV DINLGAWGNK  540
PSSASCTTFN LHQATRPKFD SLGSEVLQTA YFPYGDIHKA GHGSSMLCSK PSSFQRDIAP  600
FNTPLTQAGI IRNEIGRSGP SIMHEQKLPE NVSVVSSLGG NSMRMPVPDE ENLKGKINGC  660
KLFGVALSGE TTTQNAKRSC TKVHKQGSLV GRAIDLSRLS SYTDLFTELE RLFGMEGLLR  720
DPDKGWRILY TDSENDIMVV GDDPWHEFCN VVSKIHIYTQ EEVEKMTIGI ISDDTQSCLE  780
QAPVNMEASK SSSVGQPDSS PTVVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-119373964354Auxin response factor 1
4ldw_A1e-119373964354Auxin response factor 1
4ldw_B1e-119373964354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YR3WS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169833.10.0auxin response factor 4
RefseqXP_025671955.10.0auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A444Y7W70.0A0A444Y7W7_ARAHY; Auxin response factor
STRINGXP_007150222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]