PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YAQ0L
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 462aa    MW: 52186.1 Da    PI: 6.5203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YAQ0LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.58.6e-92694571374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+ A+av+ +++ +a + L+ l + +s +gd+++R++ayf  +L arl+   s  y+ +  ++ts    +ee+ a++ ++ vsP+++f+h+ta
  Araip.YAQ0L  69 LIHLLLSTATAVDGNNFGAALNNLTDLYQSVSLTGDSVERVVAYFSDGLTARLLTRKSPFYDMIMEEPTS----EEEFLAFTDLYRVSPYFQFAHFTA 162
                  689****************************************************99****999888885....788889999*************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaIlea+e+e     + +H+iDfd+s+G+QWp+L+q+L++++   +  slR+Tg+g+    + +el+et++rL +f + + ++ fef+ l    l  
  Araip.YAQ0L 163 NQAILEAFEREedrnnRSIHVIDFDVSYGFQWPSLIQSLSEKAtsTSRISLRVTGFGK----NLKELQETESRLVSFSKGFsNLVFEFQGL----LRG 252
                  *********9988887899***********************9544455*********....99***************8758*******8....777 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                   ++ +Lr k++E++aVnlv  l +l     +  + ++++L +v slsP +vv+veqe ++  + +Fl rf+++l+y++a+fdsl+  lp es er  +
  Araip.YAQ0L 253 SRVINLRKKKNETVAVNLVSYLNTLS----CFMK-ISDTLGFVHSLSPSIVVLVEQEGSRtPTRTFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRI 345
                  78899***************999997....3333.578*******************9997999********************************** PP

         GRAS 286 Erellgreivnvvacegaerr...erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..................sgslv.l 360
                  E++llg+ei+n++ + +++ +   ++ e++e W++r+e+ GF   ++s+ka+ qaklll++      ++ eee                  +g +v l
  Araip.YAQ0L 346 EKKLLGKEIKNMLNNYENNNIgdcAKYERMEAWKARMENHGFVGNKISSKAMIQAKLLLKMRThYCPMQFEEEddsdgggggggfrvserdEGRAVsL 443
                  **************99888652226789999****************************99875555777766678888888888888888777777* PP

         GRAS 361 gWkdrpLvsvSaWr 374
                  gW++r L++vSaW+
  Araip.YAQ0L 444 GWQNRFLLTVSAWQ 457
                  *************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.72843417IPR005202Transcription factor GRAS
PfamPF035143.0E-8969457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMMMSCSSST TMITSFDHEA YEAKIFRLLQ MRDQMLRQDH RNHDNRNKGG GGGGSFVVLG  60
NNNSNGLPLI HLLLSTATAV DGNNFGAALN NLTDLYQSVS LTGDSVERVV AYFSDGLTAR  120
LLTRKSPFYD MIMEEPTSEE EFLAFTDLYR VSPYFQFAHF TANQAILEAF EREEDRNNRS  180
IHVIDFDVSY GFQWPSLIQS LSEKATSTSR ISLRVTGFGK NLKELQETES RLVSFSKGFS  240
NLVFEFQGLL RGSRVINLRK KKNETVAVNL VSYLNTLSCF MKISDTLGFV HSLSPSIVVL  300
VEQEGSRTPT RTFLSRFTDS LHYFAAMFDS LDDCLPLESA ERLRIEKKLL GKEIKNMLNN  360
YENNNIGDCA KYERMEAWKA RMENHGFVGN KISSKAMIQA KLLLKMRTHY CPMQFEEEDD  420
SDGGGGGGGF RVSERDEGRA VSLGWQNRFL LTVSAWQPLS LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-547746027382Protein SCARECROW
5b3h_A1e-547746026381Protein SCARECROW
5b3h_D1e-547746026381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.YAQ0L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025676736.10.0scarecrow-like protein 18
TrEMBLA0A444XSY70.0A0A444XSY7_ARAHY; Uncharacterized protein
STRINGXP_004496354.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-54GRAS family protein