PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Y6XIC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 300aa MW: 33015.9 Da PI: 6.7273 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Araip.Y6XIC 114 YECKTCNRTFPSFQALGGHRASH 136 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00026 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Araip.Y6XIC 205 HECSICGSEFTSGQALGGHMRRH 227 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.11E-8 | 113 | 136 | No hit | No description |
SMART | SM00355 | 0.052 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.6E-13 | 114 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.305 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.11E-8 | 200 | 227 | No hit | No description |
PROSITE profile | PS50157 | 9.743 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.4E-11 | 205 | 228 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEMELGIGTE EFLNDASHIA KGKRTKRHKP FSPCDVAAIT SSSSSANDSA SFSSTTTFQD 60 EEQDMANCLI LLAQGKTGGE ETDDDEEDNK MREKSRRISE VTTTATTKIG FYIYECKTCN 120 RTFPSFQALG GHRASHKKPK VTSDDKKKPQ PQLQPQPQPN TLALITNCDF EETKQARVMT 180 TSPPISLQLG YGGASNNNNG KPKIHECSIC GSEFTSGQAL GGHMRRHRTA VITTTSPQPT 240 CDLPATLEVV KRPRNLLELD LNLPAPADDD HHHRDSQFQF SSTQKTMMLS AAPPLVDCHY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Y6XIC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU477796 | 0.0 | EU477796.1 Arachis hypogaea zinc finger protein ZFP133 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172032.1 | 0.0 | zinc finger protein ZAT5 | ||||
Refseq | XP_025673680.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A444Y7J9 | 0.0 | A0A444Y7J9_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150141.1 | 5e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 7e-39 | C2H2 family protein |