PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XL0W8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 619aa    MW: 69249.1 Da    PI: 5.1898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XL0W8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.11.8e-1382496192374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++ Ll+cA a+s+g++e+a+++++ l++ +s +g+p qR+aay++e+Laarla+s++ +ykal+++e++   ss++laa+++++ev+P++kf++++aN
  Araip.XL0W8 249 RQMLLDCAVALSEGNQEAASSMINDLRQKVSIQGEPSQRIAAYMVEGLAARLAESGKCIYKALKCKEAP---SSDRLAAMQILFEVCPCFKFGFVAAN 343
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  +aI eav+ +++vHiiDfdi+qG Q+++L+q LasR+++p ++R+Tgv++pes+  s   l+ +g+rL+k+Ae+lg+pfef++ v +r++ +++++L+
  Araip.XL0W8 344 NAITEAVKDARKVHIIDFDINQGSQYINLIQILASRSRKPVHVRLTGVDDPESVqrSVGGLQIIGQRLEKLAEALGLPFEFQA-VPSRTSLVTPSMLN 440
                  ****************************************************9999999************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpr+s++r++vEr++l+r+
  Araip.XL0W8 441 CHPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRDSQDRMNVERQCLARD 538
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++ + ++++ d y+v+ee+g+l +gW+d++L+++SaWr
  Araip.XL0W8 539 IVNIVACEGEDRIERYEVAGKWRARMTMAGFTSTPMSKNVSDEIRKMNKMHYYDKYNVKEEKGALHFGWEDKNLIVASAWR 619
                  ****************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.312222599IPR005202Transcription factor GRAS
PfamPF035146.3E-136249619IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MRIINPADPK KLSDTKTTKF TRYSNPSKFN KITSFQGGTM SLVRSAELAP TPYKSAKLYS  60
LKETDVRPGL SSQIFDADKH RNMHMTDTYS SESYEKYFHE SPSEELIEPC SSGIYSPIHI  120
DGASSYQFRS SSEASLVANN TLGTSFVSEF GSGFSEIGNL DDQGLMRSRL KALERRLLGQ  180
SDGEEEEEEE DMFGTSQNME IEQDISEWAD SIQNMLLQDS PKETSSSDSS LSSSISSNKE  240
MSAIPQTPRQ MLLDCAVALS EGNQEAASSM INDLRQKVSI QGEPSQRIAA YMVEGLAARL  300
AESGKCIYKA LKCKEAPSSD RLAAMQILFE VCPCFKFGFV AANNAITEAV KDARKVHIID  360
FDINQGSQYI NLIQILASRS RKPVHVRLTG VDDPESVQRS VGGLQIIGQR LEKLAEALGL  420
PFEFQAVPSR TSLVTPSMLN CHPGEALVVN FAFQLHHMPD ESVSTVNERD QLLRLVKSLN  480
PKLVTVVEQD VNTNTTPFLP RFVEAYNYYS AVFESLDVTL PRDSQDRMNV ERQCLARDIV  540
NIVACEGEDR IERYEVAGKW RARMTMAGFT STPMSKNVSD EIRKMNKMHY YDKYNVKEEK  600
GALHFGWEDK NLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6725561825377Protein SCARECROW
5b3h_D3e-6725561825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XL0W8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163426.10.0scarecrow-like protein 1
RefseqXP_020961986.10.0scarecrow-like protein 1
RefseqXP_025666842.10.0scarecrow-like protein 1
RefseqXP_025666843.10.0scarecrow-like protein 1
RefseqXP_025666844.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A445BSP50.0A0A445BSP5_ARAHY; Uncharacterized protein
STRINGGLYMA06G12701.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]