PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XL0W8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 619aa MW: 69249.1 Da PI: 5.1898 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 453.1 | 1.8e-138 | 249 | 619 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++ Ll+cA a+s+g++e+a+++++ l++ +s +g+p qR+aay++e+Laarla+s++ +ykal+++e++ ss++laa+++++ev+P++kf++++aN Araip.XL0W8 249 RQMLLDCAVALSEGNQEAASSMINDLRQKVSIQGEPSQRIAAYMVEGLAARLAESGKCIYKALKCKEAP---SSDRLAAMQILFEVCPCFKFGFVAAN 343 689*****************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 +aI eav+ +++vHiiDfdi+qG Q+++L+q LasR+++p ++R+Tgv++pes+ s l+ +g+rL+k+Ae+lg+pfef++ v +r++ +++++L+ Araip.XL0W8 344 NAITEAVKDARKVHIIDFDINQGSQYINLIQILASRSRKPVHVRLTGVDDPESVqrSVGGLQIIGQRLEKLAEALGLPFEFQA-VPSRTSLVTPSMLN 440 ****************************************************9999999************************.7************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpr+s++r++vEr++l+r+ Araip.XL0W8 441 CHPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRDSQDRMNVERQCLARD 538 ************************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ivn+vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++ + ++++ d y+v+ee+g+l +gW+d++L+++SaWr Araip.XL0W8 539 IVNIVACEGEDRIERYEVAGKWRARMTMAGFTSTPMSKNVSDEIRKMNKMHYYDKYNVKEEKGALHFGWEDKNLIVASAWR 619 ****************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.312 | 222 | 599 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-136 | 249 | 619 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MRIINPADPK KLSDTKTTKF TRYSNPSKFN KITSFQGGTM SLVRSAELAP TPYKSAKLYS 60 LKETDVRPGL SSQIFDADKH RNMHMTDTYS SESYEKYFHE SPSEELIEPC SSGIYSPIHI 120 DGASSYQFRS SSEASLVANN TLGTSFVSEF GSGFSEIGNL DDQGLMRSRL KALERRLLGQ 180 SDGEEEEEEE DMFGTSQNME IEQDISEWAD SIQNMLLQDS PKETSSSDSS LSSSISSNKE 240 MSAIPQTPRQ MLLDCAVALS EGNQEAASSM INDLRQKVSI QGEPSQRIAA YMVEGLAARL 300 AESGKCIYKA LKCKEAPSSD RLAAMQILFE VCPCFKFGFV AANNAITEAV KDARKVHIID 360 FDINQGSQYI NLIQILASRS RKPVHVRLTG VDDPESVQRS VGGLQIIGQR LEKLAEALGL 420 PFEFQAVPSR TSLVTPSMLN CHPGEALVVN FAFQLHHMPD ESVSTVNERD QLLRLVKSLN 480 PKLVTVVEQD VNTNTTPFLP RFVEAYNYYS AVFESLDVTL PRDSQDRMNV ERQCLARDIV 540 NIVACEGEDR IERYEVAGKW RARMTMAGFT STPMSKNVSD EIRKMNKMHY YDKYNVKEEK 600 GALHFGWEDK NLIVASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-67 | 255 | 618 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-67 | 255 | 618 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XL0W8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016163426.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_020961986.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_025666842.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_025666843.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_025666844.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A445BSP5 | 0.0 | A0A445BSP5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G12701.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4988 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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