PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.XA1DG | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 196aa MW: 23162.3 Da PI: 8.5573 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65.3 | 1e-20 | 112 | 172 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK+ k+ ++ rsYY+C+++ +C++ k+v+r +edp + +tY g+H+++ Araip.XA1DG 112 EDGLEWRKYGQKKTKDCRYIRSYYKCSYKneeDCKAIKRVQRIQEDPPLYRTTYYGHHTCK 172 7***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.177 | 106 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-21 | 107 | 172 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-22 | 108 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-28 | 111 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-21 | 112 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MENNNSGRKE AIEQELIRGR DVAKELLEVL IIHKSNRNEE EIERSMVMMP FIEDVVRKIL 60 ISFTNTLLLF NSDTQHNRSD EEGNHIHQGC KKSKRPPTLC YKRNIDNAIL SEDGLEWRKY 120 GQKKTKDCRY IRSYYKCSYK NEEDCKAIKR VQRIQEDPPL YRTTYYGHHT CKSSFVNYPH 180 MKLESAPSLE ESSKLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-14 | 112 | 172 | 9 | 69 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00070 | PBM | Transfer from AT5G01900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.XA1DG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020964061.1 | 1e-140 | probable WRKY transcription factor 62 | ||||
Refseq | XP_025670110.1 | 1e-140 | probable WRKY transcription factor 62 | ||||
TrEMBL | A0A1S3VT92 | 5e-52 | A0A1S3VT92_VIGRR; probable WRKY transcription factor 70 | ||||
STRING | GLYMA13G34261.1 | 2e-50 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 3e-28 | WRKY DNA-binding protein 62 |