PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.W4YCR

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 445aa MW: 50886.5 Da PI: 7.8807

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.W4YCR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.4e-21	18	109	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fYn+YA GF +rk+ + ++ +i++++ vC+keg r+ + + ++++r+ r+ trt+C a+l+vk+++ ++w+v+ +++ HnH+l+p Araip.W4YCR 18 QFYNAYACWHGFVMRKDDVVRD-NQSRIISKQIVCNKEGWRNMRYLDlDDRSREARSLTRTKCLAQLRVKLDYgCERWKVSCFVESHNHDLTP 109 6***************9998.5666************99887889999***************99*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-19	18	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MVEDIWNLES RTEDEACQFY NAYACWHGFV MRKDDVVRDN QSRIISKQIV CNKEGWRNMR 60 YLDLDDRSRE ARSLTRTKCL AQLRVKLDYG CERWKVSCFV ESHNHDLTPP QFAHLVPAYC 120 RLTVTDKVQV KNLHNFGVNT NTLIDFMHNL DRALKEYRNN ELIADFESQC SEPVMITLLE 180 GRGFEYQGIK HNLGQGRVQC DSCKLFESRG IPRSHVFCAM KFKNILEFPD SLIYKRVLKF 240 RVGALASNCN KLCDIACKDL ADFNEVQSEL VKLVIHLQSR KQGKSTPNVN VEGINDSFVI 300 KSKGAPSKSV QGNPCERSDG NASAKDLGFS PERFSNSSRS FSVKSEDHSG PKTKRSLHES 360 SESIDIASMN GFFNKNLYSL KQVKDSQQDK GHSFTNYECD NDVMDEKCDT PHVQNDVQDL 420 LPSSMPYGNK QGSYMTLFAS MHKIR

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MVEDIWNLES RTEDEACQFY NAYACWHGFV MRKDDVVRDN QSRIISKQIV CNKEGWRNMR  60
YLDLDDRSRE ARSLTRTKCL AQLRVKLDYG CERWKVSCFV ESHNHDLTPP QFAHLVPAYC  120
RLTVTDKVQV KNLHNFGVNT NTLIDFMHNL DRALKEYRNN ELIADFESQC SEPVMITLLE  180
GRGFEYQGIK HNLGQGRVQC DSCKLFESRG IPRSHVFCAM KFKNILEFPD SLIYKRVLKF  240
RVGALASNCN KLCDIACKDL ADFNEVQSEL VKLVIHLQSR KQGKSTPNVN VEGINDSFVI  300
KSKGAPSKSV QGNPCERSDG NASAKDLGFS PERFSNSSRS FSVKSEDHSG PKTKRSLHES  360
SESIDIASMN GFFNKNLYSL KQVKDSQQDK GHSFTNYECD NDVMDEKCDT PHVQNDVQDL  420
LPSSMPYGNK QGSYMTLFAS MHKIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.W4YCR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637177	1e-171	HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192007.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025616892.1	1e-140	protein FAR1-RELATED SEQUENCE 9-like
Refseq	XP_025638221.1	1e-140	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445D3M7	0.0	A0A445D3M7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9653	6	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-16	FAR1-related sequence 5