PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TS2UL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 431aa    MW: 50011.4 Da    PI: 4.9637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TS2ULgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.2e-2270161191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++  g+w+v+++++ HnH+l+p
  Araip.TS2UL  70 QFYNAYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDlDNRSREARSLTRTKCPARLRVKLDYgCGRWKVSSFVESHNHDLTP 161
                  6****************99998.8888****************99887889999*******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2070161IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.076251287IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-6262289IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-4263279IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MSINEDDVKN DSDNDLGDDF DYQPNAEDDD VDSLDSTSKS EEVCGVKRIA DLMVEDIWNL  60
EFRIEDEACQ FYNAYSCWHG FVMRKDDVVR DNQGRIISRQ LVCNKEGWRN MRYLDLDNRS  120
REARSLTRTK CPARLRVKLD YGCGRWKVSS FVESHNHDLT PPQFAHLVLA LKEYRNNELI  180
ADFKSQFSEP VMITSLEVYE RFASCYFTRN IFKEIRNEIQ RAGALNIKVL STTLDKVEFS  240
VTALGDSAKD RRVEVDRGKN LFSCSCKMFE SRGIPCSHVF YAMKFENILE FPDSLIYKRW  300
TKNEKNEFIS TEMPVNDDVE RVLKFRVGAL ASNCNKLCDI ACKDLADFDE VQYELVNLIL  360
RLQSRKQVKE SQQDKGHSFT NYECTVDDVM DEKCDTPHVQ IDVRDPFPSS MPCGNKQGSY  420
MALFTSMHRT L
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TS2UL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016164467.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025664617.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BN500.0A0A445BN50_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-17FAR1-related sequence 5