PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SD5PB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 768aa    MW: 84250.1 Da    PI: 7.9373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SD5PBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07366386526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Araip.SD5PB 366 PCPEFRK-GSCQKGDSCEYAHG 386
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.79E-164580IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.79E-16118244IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-15122265IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-8144233IPR020683Ankyrin repeat-containing domain
CDDcd002049.48E-12167242No hitNo description
SMARTSM002480.038167197IPR002110Ankyrin repeat
PROSITE profilePS5029714.743167247IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02202234IPR002110Ankyrin repeat
PROSITE profilePS5008810.099202237IPR002110Ankyrin repeat
SMARTSM003564.0E-5361387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544361388IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5366386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4366388IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4393425IPR000571Zinc finger, CCCH-type
SMARTSM0035625396419IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15396420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MREKKGDRSK LQALQLLLVG VVLQDNKKAS TSNLASSSTI LNRGLLDFLL STHALFTLLS  60
ATKTTLSKYY IHTFSLDVAG IGKFLFVKIW GMCSGSKSKL SPSDEVMEGE FQKQNQDGVH  120
NFSALLELSA SDDFEAFRRE VEEKGCDVND AGFWYGRRIG SKKMGFEKRT PLMIASLFGS  180
TRVLKYIIET GMVDVNRACG SDRATALHCA VAGGSESSLE IVKLLLDAHA DADCVDASGN  240
KPVNLIAPAF NSLSSSRRKA IELFLRGGER DQLFNQEMEQ QMLSSLSLKE GLEKKEGTDK  300
KEYPVDVSLP DINNGVYGTD EFRMYSFKVK PCSRAYSHDW TECPFVHPGE NARRRDPRKY  360
PYSCVPCPEF RKGSCQKGDS CEYAHGVFES WLHPAQYRTR LCKDETGCSR KVCFFAHKPE  420
ELRPVYASTG SAMPSPKSYS ASGLDMTAMS PLSLSSSSLP MPTVSTPPMS PLAASSSPKS  480
GSLWANKINL TPPSLQLPGS RLKTALSARD FDMEMELLGL DSPARQQQQQ QQLIEEIARI  540
SSPSFRSRIG DLNPTNLDDL LAAADPSLLS QLHGISAQPS TPTQLQSSMR QNMNNMNHLR  600
ASYPSNVTSS PVRKPSAFGF DSSAAVAAAV MNSRSAAFAK RSQSFIDRSA ANHHIGLSSP  660
SNPSCRVSSG LSDWNSPSGK LDWGVNGDEL NKLRKSASFG FRNNGAATAS PLAQSEHVEP  720
DVSWVHSLVP SESSEIFGAE KKQQFDLSKE RLPPWVEQLY IEQEQMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SD5PB
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166023.10.0zinc finger CCCH domain-containing protein 29
RefseqXP_025665500.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A444YDI80.0A0A444YDI8_ARAHY; Uncharacterized protein
STRINGGLYMA14G01990.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein