PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.S1RHU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 2055aa MW: 232938 Da PI: 6.2601 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.8 | 2.4e-111 | 392 | 761 | 1 | 366 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d++ a++lL+++++++ p gd+ qRla yf+ +L+ar+a++++++ ++ + ++ + ++ l+a+++f ++P+ kf+h+ Araip.S1RHU 392 LRTLLVLCAQAVSANDQRTANELLKQIRQHSLPFGDAYQRLARYFADGLEARMAGTGPGIHIFYASLSYKKFSAADFLKAYQVFISACPFKKFAHFFS 489 5789****************************************************99998777777777777************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++Il+ +e++e++Hi+Df+i +G+QWp L++ La+R++gpp+lRiTg++ p++g +e++ee g+rLak+++ ++vpfe+++++++++e++++e+L Araip.S1RHU 490 NKMILNIAEKAETLHIVDFGILYGFQWPILIKFLAKRDGGPPKLRITGIEYPQAGfrPTERIEESGRRLAKYCKLFNVPFEYKAIASRHWETIQIEDL 587 ******************************************************9*****************************9999********** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++k +E++aVn+ ++ ++ll+e+v+++s+r++vL+l+++++P ++ ++ + ++n++ Fl+rf eal +ysa++d++++ +pr++ +r+++Ere+lgr Araip.S1RHU 588 NIKDNEVVAVNCLVRFKNLLEETVEVNSPRNAVLNLIRRINPAIFAHTVVNGSYNAPFFLTRFREALFHYSAIYDMFDTLIPRNNAWRSMLEREFLGR 685 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrp 366 ei+nvvaceg er+er et+++W++r ++aGF+++pl++ +++ ++ l++ + + + +e+++++++gWk+r Araip.S1RHU 686 EIMNVVACEGLERVERPETYKQWQARNSRAGFRQLPLDKALMSKFRSKLKEWYqhHKDFVFDEDNNWMLQGWKGRI 761 *************************************************998756677***************995 PP | |||||||
2 | GRAS | 331 | 2.3e-101 | 1032 | 1396 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+av++ d+++a +L+++++++sp+gd +qR+a+yf+ +L++rl+ ++ y pp + + ++ l+a+kl++ +sP+ +++ +a Araip.S1RHU 1032 TLLTQCAQAVADYDKRNAYDTLKQIRQHSSPSGDGLQRMAHYFAIGLETRLNA-GTPSY---PPLDM--ASAADMLKAYKLYVTASPLQWMTNKLA 1121 69**************************************************9.33333...33333..34789********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 q+I + v++e+rvHiiDf+is+G+QWp+L++ +++R +g+ +lRiTg++ p++g +e++eetg+rL+ ++++ +vpfe+n +a+++e++++e Araip.S1RHU 1122 TQTIKNLVQNESRVHIIDFGISYGFQWPCLIKYMSER-NGAIKLRITGIDLPQPGfrPTERVEETGRRLETLCKRYKVPFEYNC-IAQKWETIRVE 1215 ************************************9.6779************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+++++E+++Vn+ ++l++l+de+vs++s+rd+vLkl+++++Pk++ + + +++++ F +rf eal ++s+ f+++ea+ pre+ er+++E+ Araip.S1RHU 1216 DLKIDRDEVTVVNCFYRLKNLPDETVSVNSPRDAVLKLMRRINPKIFLHGVVNGSYSAPFFPTRFREALFHFSSQFNMFEANCPREDAERMMLEKG 1311 ************************************************************************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++gr++ nv+acegaer+er e++++W+ r ++aGFk+++++++ ++++k ++++ + + + v+++ ++++ gWk+r ++S+W Araip.S1RHU 1312 MIGRDAINVIACEGAERVERPESYKRWQIRNKRAGFKQIRVDQELVNEIKGMVKNEYHRDFVVDQDGNWVLHGWKGRIFHALSVW 1396 *********************************************************999************************* PP | |||||||
3 | GRAS | 348.5 | 1.1e-106 | 1688 | 2052 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+av++ d+++a +L+++++++sp+gd mqR+a+yf+ +L++rl+ ++ + lp +s ++ l+a+kl++ +sP+ ++++ a Araip.S1RHU 1688 SLLTQCAQAVANYDQRNAYDTLKQIRQHSSPAGDGMQRMAHYFAIGLETRLNA---GTPSYLPLDMAS---AADMLKAHKLYVTASPLQRMTNTFA 1777 79**************************************************9...455555666665...899********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 q+I++ v++e++vHiiDf+i +G+QWp+L++ L++R + p +lRiTg++ p++g +e+leetg+rL++++++ +vpfe+n +a+++e+++le Araip.S1RHU 1778 TQTIMNLVQNESCVHIIDFGICYGFQWPCLIKRLSQR-NAPIKLRITGIDLPQPGfrPAERLEETGRRLENYCKRHNVPFEYNC-IAQKWETIRLE 1871 ************************************9.5668************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+++++E+++Vn+ ++l++l+de+v ++s+rd+vLkl++s++P+++ + + +++++ Fl+rf eal ++s+ fd++ea++pre+ er+ +E+ Araip.S1RHU 1872 DLKIDRNEVTVVNCFYRLKNLPDETVLVNSPRDAVLKLIRSINPNIFLHGVVNGSYSAPFFLTRFREALFHFSSQFDMFEANVPREDVERMILEKG 1967 ************************************************************************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++++++ ++++k +l+k + + + v+++ +++++gWk+r L ++SaW Araip.S1RHU 1968 LIGRDAINVIACEGAERVERPETYKQWQIRNKRAGFKQIRVDQELVNEIKGMLKKEYHRDFVVDQDGKWVLQGWKGRILHALSAW 2052 *********************************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.847 | 366 | 747 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-109 | 392 | 761 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 58.872 | 1004 | 1377 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-99 | 1032 | 1396 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 61.008 | 1660 | 2033 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-104 | 1688 | 2052 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 2055 aa Download sequence Send to blast |
MDPNRVRNTD YINAYGFGDY GGALLSDFND WDLHRQYNHP FDLTPSNAFD RFDADTFGLH 60 AHAVSNSGSS EPFVPPSSAS RVEKSMPGSA FGAVASMPDP SVEDTDFSET VRYISQILLE 120 ENFEDKPCMC YNPLSLQDTE KSFYDALNQE FPLSPNEHPL DIHQNLESPD GVSAGSFPTG 180 SSGDPFSRYS CFRIGDGVFD LDPSATKLLA QNIFSNADSI LQFKRGLEEA SKFLPPGPRL 240 STGLESSSMH AEESKRRVEK AAVPVMVEND AKERSNRVVA GPYHIVPATT KAAKNTAARS 300 LDGVKSRKHH ARQGDDGEEE RCNKQSAVSV EEENEISEMF DKVLLSVENV PLSAEQQGGL 360 VVDTQLIEQP HSSEGGRSRS KKKGRKKETV DLRTLLVLCA QAVSANDQRT ANELLKQIRQ 420 HSLPFGDAYQ RLARYFADGL EARMAGTGPG IHIFYASLSY KKFSAADFLK AYQVFISACP 480 FKKFAHFFSN KMILNIAEKA ETLHIVDFGI LYGFQWPILI KFLAKRDGGP PKLRITGIEY 540 PQAGFRPTER IEESGRRLAK YCKLFNVPFE YKAIASRHWE TIQIEDLNIK DNEVVAVNCL 600 VRFKNLLEET VEVNSPRNAV LNLIRRINPA IFAHTVVNGS YNAPFFLTRF REALFHYSAI 660 YDMFDTLIPR NNAWRSMLER EFLGREIMNV VACEGLERVE RPETYKQWQA RNSRAGFRQL 720 PLDKALMSKF RSKLKEWYQH HKDFVFDEDN NWMLQGWKGR IFLRFNMLST NPYLENFPGH 780 LQPIMNGFHS SSSSSSGTIS SGDSTESSKY SNNILRYISD ILMDEEDDLE NKPCMLQQCL 840 RLQAAEKSFS EVLGNSSNSP PSQGCDESNQ DGDYCRSTSF ESYSSFNTDN SSYEFDWVNL 900 VGEYESSLLQ ASLLGGSYGT HYQNMVPLIN NEEGSSPGTR EKRSYQVDDD ASYEQGRRGN 960 KISATVFSDE SEPPEILYEV LRIPYGRSKK YCCVEPLSKN DMLKMQNVGS NSKTGRSKNR 1020 NSNTDATVDL WTLLTQCAQA VADYDKRNAY DTLKQIRQHS SPSGDGLQRM AHYFAIGLET 1080 RLNAGTPSYP PLDMASAADM LKAYKLYVTA SPLQWMTNKL ATQTIKNLVQ NESRVHIIDF 1140 GISYGFQWPC LIKYMSERNG AIKLRITGID LPQPGFRPTE RVEETGRRLE TLCKRYKVPF 1200 EYNCIAQKWE TIRVEDLKID RDEVTVVNCF YRLKNLPDET VSVNSPRDAV LKLMRRINPK 1260 IFLHGVVNGS YSAPFFPTRF REALFHFSSQ FNMFEANCPR EDAERMMLEK GMIGRDAINV 1320 IACEGAERVE RPESYKRWQI RNKRAGFKQI RVDQELVNEI KGMVKNEYHR DFVVDQDGNW 1380 VLHGWKGRIF HALSVWNMKM ASGGGGYGTA SMKEPIMNGF HCESSSYSPG TSSSEDSAEY 1440 NKYSNPILRY ISDILMEEED DLENKPCMLQ QCLKLQAAEK SFSEVLGNSS NSVPSQGCDE 1500 NNRDGDYGRT TSFESYSSCT TDNNSYESDW VNLVGEYESS LLQAPDNDSY ESDWLNLLDS 1560 PNDGSSEIHY QNMVLLTNNE EGSRSGTTGT REKRSIQVDD DTSYEQGRRG SKISAVFSDE 1620 SEPPEILDEV LRVQIGRSQC LSGVEPLPEN EMLKRQNVDS VGSSGKTARS KKGSSRNSNT 1680 GATVDLWSLL TQCAQAVANY DQRNAYDTLK QIRQHSSPAG DGMQRMAHYF AIGLETRLNA 1740 GTPSYLPLDM ASAADMLKAH KLYVTASPLQ RMTNTFATQT IMNLVQNESC VHIIDFGICY 1800 GFQWPCLIKR LSQRNAPIKL RITGIDLPQP GFRPAERLEE TGRRLENYCK RHNVPFEYNC 1860 IAQKWETIRL EDLKIDRNEV TVVNCFYRLK NLPDETVLVN SPRDAVLKLI RSINPNIFLH 1920 GVVNGSYSAP FFLTRFREAL FHFSSQFDMF EANVPREDVE RMILEKGLIG RDAINVIACE 1980 GAERVERPET YKQWQIRNKR AGFKQIRVDQ ELVNEIKGML KKEYHRDFVV DQDGKWVLQG 2040 WKGRILHALS AWVPA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-48 | 375 | 2054 | 1 | 379 | Protein SCARECROW |
5b3h_D | 8e-48 | 375 | 2054 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.S1RHU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169454.1 | 0.0 | LOW QUALITY PROTEIN: uncharacterized protein LOC107612146 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A444Y8F7 | 0.0 | A0A444Y8F7_ARAHY; Uncharacterized protein | ||||
STRING | AES67628 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|