PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RWP2N
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 459aa    MW: 51788.6 Da    PI: 7.0385
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RWP2NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.74.8e-83404574374
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  l+ +cA+ ++ g+ + a++ La++s+las++gdp+qRla+yf eAL  +l++ s  + ++ + +++ s   + e  ++  lf+e+ P+ ++s+ ++Nq
  Araip.RWP2N  40 LVRNCAKYIECGNISDADSGLAKISHLASSEGDPFQRLATYFSEALTCQLVNrSYLHGAHHILSKPLS---TFEDSFVKGLFFELYPFQRVSYAVTNQ 134
                  6679********************************************99994444444445445444...7888899999***************** PP

         GRAS 101 aIleavegeervHiiDfdisq.GlQWpaLlqaLasRpeg..........ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                  aI ea+ g + +Hi+D+++ +  +QW+ ++q+L +R ++           p l+iT v+     ++e l +++ rL+  A+++     +++  +++le
  Araip.RWP2N 135 AIIEAMTGLQGIHILDLSAPHdATQWVLFMQSLKERCSSssssstrpqqRPYLKITCVHT----NQEVLAQIKLRLTLEADKF-----IQL--VSTLE 221
                  ******************965489*********99983334555565559**********....99***************85.....343..699** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdevLk 229
                  +l+l++L + +gE +a+++vlqlhrll                                                        +++v+   + + +L+
  Araip.RWP2N 222 NLNLDDLPILNGEPVAISIVLQLHRLLstddppvpavvsnqffhqqnfadviakdsynnnnhnviinqspnsalalathhrltQSPVP---KMECFLH 316
                  ****************************************************************************987653322222...5679*** PP

         GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                   +++l+Pkv+v++eqe++ n++s+ +r+ +al++y+alfd+l +     s ++i vEr++lg++i+n++acegaer+er e+l+ W +rle aGF   
  Araip.RWP2N 317 GLWKLQPKVMVIMEQESNVNGQSLTDRVDKALYFYAALFDCLVTA---PSVKKILVERAMLGEQIKNIIACEGAERKERYESLKAWISRLELAGFCGE 411
                  ******************************************777...699*********************************************** PP

         GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++s + +    + l++++ +gy++  +++ l+l+W+++pL+s+SaWr
  Araip.RWP2N 412 AISLEGMLRGLTELQNFA-RGYKIIRDEKFLFLCWNNNPLFSLSAWR 457
                  *****************9.***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.77211438IPR005202Transcription factor GRAS
PfamPF035141.7E-8040457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MWHTCINVFD MIIALLGSAH GYPWFKGISS EPRGMLLYTL VRNCAKYIEC GNISDADSGL  60
AKISHLASSE GDPFQRLATY FSEALTCQLV NRSYLHGAHH ILSKPLSTFE DSFVKGLFFE  120
LYPFQRVSYA VTNQAIIEAM TGLQGIHILD LSAPHDATQW VLFMQSLKER CSSSSSSSTR  180
PQQRPYLKIT CVHTNQEVLA QIKLRLTLEA DKFIQLVSTL ENLNLDDLPI LNGEPVAISI  240
VLQLHRLLST DDPPVPAVVS NQFFHQQNFA DVIAKDSYNN NNHNVIINQS PNSALALATH  300
HRLTQSPVPK MECFLHGLWK LQPKVMVIME QESNVNGQSL TDRVDKALYF YAALFDCLVT  360
APSVKKILVE RAMLGEQIKN IIACEGAERK ERYESLKAWI SRLELAGFCG EAISLEGMLR  420
GLTELQNFAR GYKIIRDEKF LFLCWNNNPL FSLSAWRYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-264345625378Protein SCARECROW
5b3h_A5e-264345624377Protein SCARECROW
5b3h_D5e-264345624377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RWP2N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016191682.10.0scarecrow-like protein 3
TrEMBLA0A445A7480.0A0A445A748_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2863622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-91scarecrow-like 3