PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.RVR18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 29518.8 Da PI: 4.462 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 14 | 49 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v+++G + R++k+c++rw +yl Araip.RVR18 14 KGAWSEEEDKKLTAYVERYG------------LLRCGKSCRLRWMNYL 49 79******************............479***********97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.2e-17 | 55 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++ E++l+ d++kq+G++ W++Ia+ ++ gRt++++k++w+++l Araip.RVR18 55 RGNYSQKEEQLIMDLHKQHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 100 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.013 | 9 | 49 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-24 | 11 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-6 | 13 | 51 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-6 | 14 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-13 | 15 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.823 | 50 | 104 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 55 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 57 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-10 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MVRAPYFDAN GIKKGAWSEE EDKKLTAYVE RYGLLRCGKS CRLRWMNYLR PNLKRGNYSQ 60 KEEQLIMDLH KQHGNKWSLI AENLPGRTDN EIKNYWHSHL KKFQNCNVNN TSSDDDDDDD 120 LNKSKSSSQN TKEHERPKSE VLTFTTDDDN DDDSHHILES SLSNVTTESS YSYTEEEEDN 180 KGNNNNNNAW LCFSSGHEEE SNREEDRFAS WGATTLFDEF GSSFWTEPFI SDDAFSQDYN 240 YILYDREDPF FI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 14 | 102 | 7 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.RVR18 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193298.1 | 1e-160 | transcription factor MYB14-like | ||||
Refseq | XP_025641078.1 | 1e-160 | transcription factor MYB14-like | ||||
Swissprot | Q9SJX8 | 1e-44 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A445A5H2 | 1e-159 | A0A445A5H2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G45520.1 | 3e-78 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74080.1 | 7e-44 | myb domain protein 122 |
Publications ? help Back to Top | |||
---|---|---|---|
|