PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RQ3D1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 343aa    MW: 38264.4 Da    PI: 4.7883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RQ3D1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.3e-32156212258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  Araip.RQ3D1 156 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLH 212
                  8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.278150215IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29153212IPR003657WRKY domain
SuperFamilySSF1182901.2E-26153212IPR003657WRKY domain
SMARTSM007742.1E-35155214IPR003657WRKY domain
PfamPF031065.4E-26156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVESTTNALM TMMMEEEEVI LMSSNSNSNS SCSEGSEDDD LVKELLDDAT PLLLPPSDHY  60
NSIIRPPPSY FSNTDDGDGD DYDHAINRFI SNIYSGPTIS DFENALSVIN NSDNHPSDQH  120
LEHLSSARVS ILERGLSKIE NKYTLKFKCF GNGMGDDGYK WRKYGQKSIK NSPNPRSYYR  180
CTNPRCSAKK QVERSNEDPD TLIITYEGLH LHFAYPHFLT GQPHPQSDPP IKKPKPMPIA  240
SPENRVQEIL EAKDVQANST LGLIQTTLTD SQEDMANVNL GSQGLLEDMV PFMVRNPHNN  300
GNSTNSLFSS SSQPTTPPSL WFPNYSTSCH TVGLNFSNKC INM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201562121571WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RQ3D1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-47AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196644.10.0probable WRKY transcription factor 49
RefseqXP_025648621.10.0probable WRKY transcription factor 49
TrEMBLA0A444ZNQ10.0A0A444ZNQ1_ARAHY; Uncharacterized protein
STRINGGLYMA07G16040.21e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-47WRKY DNA-binding protein 49