PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.RM65A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 553aa MW: 61577.4 Da PI: 9.5101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 244 | 302 | 2 | 55 |
HHHHHHHHHHHHHHHHHH.........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Araip.RM65A 244 RSKHSATEQRRRSKINDRrvlpilhkiFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 302 889**************88888888889*********9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-21 | 239 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-14 | 240 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-12 | 244 | 306 | No hit | No description |
Pfam | PF00010 | 2.9E-8 | 244 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 248 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.064 | 251 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MMELPQARSF GTEGRKPTHD FLSLYSNSTS QQDPRPPSQG SYLKTHDFLR VETKANTKEE 60 ASDETSSTVQ KLPPAAPQPP PSVEHHQHLL PGGIAMKTPT AVLIPQVVSL YGMSLQLRRE 120 RQGRRIILWA TSLFPEASPR ADGSINLETQ SAKQGHWTST EGTPQSFSNN RHNSFNSRSS 180 SQTTGQRNQS FIEMMKSAKD CAQDEELDNE ETYFLKKESS NPERAELRVK VDGKSSDQKP 240 NTPRSKHSAT EQRRRSKIND RRVLPILHKI FQMLRELIPH SDQKRDKASF LLEVIEYIHF 300 LQEKVHKYEG SFQGWNHEPE KLMPWRNNDK PAESFEACGT NSGSGPSPTL LFASKIDEKN 360 ITLSPPITGS SQKLEPGLNT ATPFKNMDHP PGITNNTFPI PISSPPNFFP PRKSIGLGEM 420 PHVTHRLPSD AGNGIYQPSV ECQTVTATNE KLKEKELAIE GGAISISSVY SKGLLDTLTH 480 ALQSSGVDLS QASISVQIEL RKQENIIRPT LPMSMCGIKG DEVPSNNQRM MRSRVATSGK 540 SDQPVKKLKS CKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.RM65A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 7e-33 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025629508.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_025629509.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
Refseq | XP_025629510.1 | 0.0 | transcription factor BIM1 isoform X1 | ||||
TrEMBL | A0A445AZ30 | 0.0 | A0A445AZ30_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G08980.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 2e-77 | bHLH family protein |