PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RA93N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 355aa    MW: 38573.3 Da    PI: 6.8808
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RA93NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32188244158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+Rg+gGrF
  Araip.RA93N 188 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRARGTGGRF 244
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-36186247IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.727187247IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28189244IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-24190212IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860192212IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.9E-24221244IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MWNGIYVIGI SCVSKDMQSK SETANRLRSD PHSFQPSGVC SEPWWHGGGY SAIPQAMPGA  60
NASNSSSLEC PNGDSESNEE GQSLSNSGMN EEDDDAAKDS QPADPNQSGN YGQENQGMQH  120
SAPSMREEGL AQAPQLELVG HSIACATNPY QDPYYGGMMA AYGPQQLGFA PFIGMPHARM  180
PLPLEMAQEP VYVNAKQYQG ILRRRQARAK AELEKKLIKS RKPYLHESRH QHAMRRARGT  240
GGRFAKKSEV EGSNKGKEKD GSGPVLSSQS ISSSGSEPLP CDSNQTWNSP NVQLNARGTK  300
VHDKYENGSG SYHSHNGLQS YHLHSGDRVD EGDCSGQQRG SITNEHASAR RLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-19188244258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RA93N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169039.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_016169092.10.0nuclear transcription factor Y subunit A-1 isoform X1
SwissprotQ9LXV51e-89NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A445EW810.0A0A445EW81_ARAHY; Uncharacterized protein
STRINGGLYMA18G07890.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-90nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]