PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.R0657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 211aa MW: 23678.6 Da PI: 9.8253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.8 | 6.6e-47 | 15 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 +ppGfrF+Ptdeelv +yLk kv + +l++ ++i+++++ +++PwdLp ++ e++e+yfFs+++ ky++g+r nr+t+sgyWkatg+dk+++s+ Araip.R0657 15 MPPGFRFQPTDEELVFQYLKCKVFSFPLPA-SMIPDINLSNYDPWDLPGNC-DEHQEMYFFSSKEPKYRNGSRMNRTTTSGYWKATGSDKRIISSsnn 110 79****************************.89***************655.45789************************************98666 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g++ktLvfy+g++p+g++t+Wv+heyrl Araip.R0657 111 sdDNSILGIRKTLVFYQGKSPNGTRTHWVLHEYRL 145 655556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-53 | 12 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.005 | 15 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-24 | 16 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEKLNFVKKN GVSRMPPGFR FQPTDEELVF QYLKCKVFSF PLPASMIPDI NLSNYDPWDL 60 PGNCDEHQEM YFFSSKEPKY RNGSRMNRTT TSGYWKATGS DKRIISSSNN SDDNSILGIR 120 KTLVFYQGKS PNGTRTHWVL HEYRLVSTTL HANNNACDIG DWVLCRLSVK KRSVGSGSII 180 ISKKARSSPS SSSSSSTSSN NVMEVSSSYA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-47 | 15 | 174 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-47 | 15 | 174 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-47 | 15 | 174 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-47 | 15 | 174 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 9e-47 | 15 | 174 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 7e-47 | 15 | 174 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 7e-47 | 15 | 174 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.R0657 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193506.1 | 1e-156 | NAC domain-containing protein 41 | ||||
Refseq | XP_025637475.1 | 1e-156 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 3e-64 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A444ZYC4 | 1e-155 | A0A444ZYC4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G01280.1 | 4e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 3e-61 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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