PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Q6LLS
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 645aa    MW: 72888.5 Da    PI: 4.9199
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Q6LLSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.72.4e-1072736421373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh.lt 97 
                  l++lL++cA+avss++  +a++lL +++ ++sp+gd++qRl +yf++AL+ar++++++++ +al++++ s    s+ ++a++++  ++P+ kf+  + 
  Araip.Q6LLS 273 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHYFVNALEARMSGTGTHIHSALSTKRPS---ASDMVKAYQMYASACPFDKFGIrFS 367
                  689*************************************************************999999...8999****************97256 PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   N+    a+eg +++Hi+ f+i +G++Wp L+  L+  p+gpp+lRiTg++ p      +le+tg+ La+++e+++vpfefn++vak++e +++e+L+
  Araip.Q6LLS 368 INSIDNSAMEGVQTLHIVEFGIRYGFKWPGLIYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNVPFEFNAVVAKKWERIKVEDLK 463
                  66666789********************************************66..99**************************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+v+v+   + +++++ F++rf ea+ +ysa+fd+l+++++r++  r ++E++++g+e
  Araip.Q6LLS 464 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNVFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 561
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++nvvaceg+er+er  +++kW+ r ++aGF++++l+e++ ++ k +lr+ +  + ++++ + ++l++gWk+r L++ S+W
  Araip.Q6LLS 562 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHKDFMLHADGKWLLQGWKGRILYASSCW 642
                  *************************************************9999999************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.574247622IPR005202Transcription factor GRAS
PfamPF035148.2E-105273642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MADPSHGGNP ATDFTTNRDE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL  60
LTAEKSLYDA IGQRYPSSAS TLSSSTSSSI QHHNYYPNVE SPGDSYSSIS SGSTCGTTNT  120
SSSADYFWSG FDLSMIPLMP NTLPFPDTFN FQSNPSSTTP QSNHRSDFTA TNNSSGLGQV  180
VIKTEEVDYD FEEEEEEEEE VQFLAESMGS SSKQSALYMD DTELSEFFDK VLLGAGLGRG  240
SSQADEGVPK DSRGKKSRAR KRNDKNDDEV IDLRSLLMQC AQAVSSDNRP MAKELLMQIK  300
LHSSPTGDAT QRLSHYFVNA LEARMSGTGT HIHSALSTKR PSASDMVKAY QMYASACPFD  360
KFGIRFSINS IDNSAMEGVQ TLHIVEFGIR YGFKWPGLIY RLSRLPSGPP KLRITGIEYP  420
LPGLKLEQTG QCLARYCERF NVPFEFNAVV AKKWERIKVE DLKIRENEFV AVNCMFRFEN  480
LHDETVVLEN PRDSVLELIR KANPNVFVHG IINGNYDAAF FVTRFKEAMF HYSAMFDMLD  540
NTVARDDPIR LMYEEAIFGK EVMNVVACEG NERIERPHNY KKWQVRNTRA GFRQLSLDEQ  600
MIEKFKDMLR NEGYHKDFML HADGKWLLQG WKGRILYASS CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-472626448380Protein SCARECROW
5b3h_A1e-472626447379Protein SCARECROW
5b3h_D1e-472626447379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Q6LLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172219.10.0scarecrow-like protein 14
RefseqXP_020964236.10.0scarecrow-like protein 14
RefseqXP_020964237.10.0scarecrow-like protein 14
RefseqXP_020964238.10.0scarecrow-like protein 14
RefseqXP_020964239.10.0scarecrow-like protein 14
RefseqXP_029151172.10.0scarecrow-like protein 14
RefseqXP_029151173.10.0scarecrow-like protein 14
SwissprotQ9XE581e-172SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A444Y8B10.0A0A444Y8B1_ARAHY; Uncharacterized protein
STRINGXP_004505854.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-173SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]