PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.Q6LLS | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 645aa MW: 72888.5 Da PI: 4.9199 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.7 | 2.4e-107 | 273 | 642 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh.lt 97 l++lL++cA+avss++ +a++lL +++ ++sp+gd++qRl +yf++AL+ar++++++++ +al++++ s s+ ++a++++ ++P+ kf+ + Araip.Q6LLS 273 LRSLLMQCAQAVSSDNRPMAKELLMQIKLHSSPTGDATQRLSHYFVNALEARMSGTGTHIHSALSTKRPS---ASDMVKAYQMYASACPFDKFGIrFS 367 689*************************************************************999999...8999****************97256 PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 N+ a+eg +++Hi+ f+i +G++Wp L+ L+ p+gpp+lRiTg++ p +le+tg+ La+++e+++vpfefn++vak++e +++e+L+ Araip.Q6LLS 368 INSIDNSAMEGVQTLHIVEFGIRYGFKWPGLIYRLSRLPSGPPKLRITGIEYPL--PGLKLEQTGQCLARYCERFNVPFEFNAVVAKKWERIKVEDLK 463 66666789********************************************66..99**************************************** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E +aVn++++ ++l+de+v le++rd+vL+l+++ +P+v+v+ + +++++ F++rf ea+ +ysa+fd+l+++++r++ r ++E++++g+e Araip.Q6LLS 464 IRENEFVAVNCMFRFENLHDETVVLENPRDSVLELIRKANPNVFVHGIINGNYDAAFFVTRFKEAMFHYSAMFDMLDNTVARDDPIRLMYEEAIFGKE 561 ************************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++nvvaceg+er+er +++kW+ r ++aGF++++l+e++ ++ k +lr+ + + ++++ + ++l++gWk+r L++ S+W Araip.Q6LLS 562 VMNVVACEGNERIERPHNYKKWQVRNTRAGFRQLSLDEQMIEKFKDMLRNEGyHKDFMLHADGKWLLQGWKGRILYASSCW 642 *************************************************9999999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.574 | 247 | 622 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-105 | 273 | 642 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MADPSHGGNP ATDFTTNRDE NPAPFDESDF SAAALKYIDE MLMEEDIDEE YNMFQHSSAL 60 LTAEKSLYDA IGQRYPSSAS TLSSSTSSSI QHHNYYPNVE SPGDSYSSIS SGSTCGTTNT 120 SSSADYFWSG FDLSMIPLMP NTLPFPDTFN FQSNPSSTTP QSNHRSDFTA TNNSSGLGQV 180 VIKTEEVDYD FEEEEEEEEE VQFLAESMGS SSKQSALYMD DTELSEFFDK VLLGAGLGRG 240 SSQADEGVPK DSRGKKSRAR KRNDKNDDEV IDLRSLLMQC AQAVSSDNRP MAKELLMQIK 300 LHSSPTGDAT QRLSHYFVNA LEARMSGTGT HIHSALSTKR PSASDMVKAY QMYASACPFD 360 KFGIRFSINS IDNSAMEGVQ TLHIVEFGIR YGFKWPGLIY RLSRLPSGPP KLRITGIEYP 420 LPGLKLEQTG QCLARYCERF NVPFEFNAVV AKKWERIKVE DLKIRENEFV AVNCMFRFEN 480 LHDETVVLEN PRDSVLELIR KANPNVFVHG IINGNYDAAF FVTRFKEAMF HYSAMFDMLD 540 NTVARDDPIR LMYEEAIFGK EVMNVVACEG NERIERPHNY KKWQVRNTRA GFRQLSLDEQ 600 MIEKFKDMLR NEGYHKDFML HADGKWLLQG WKGRILYASS CWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-47 | 262 | 644 | 8 | 380 | Protein SCARECROW |
5b3h_A | 1e-47 | 262 | 644 | 7 | 379 | Protein SCARECROW |
5b3h_D | 1e-47 | 262 | 644 | 7 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.Q6LLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172219.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020964236.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020964237.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020964238.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_020964239.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_029151172.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_029151173.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-172 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A444Y8B1 | 0.0 | A0A444Y8B1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004505854.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-173 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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