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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.PJ0LD | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 196aa MW: 22537.2 Da PI: 4.3897 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 28.6 | 4.8e-09 | 134 | 196 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgC 62
+fYn+YAk+ s r+sk +++ ng +t++ fv ++g+re ++ + ++++r++++etr+gC
Araip.PJ0LD 134 SFYNFYAKMNRISARRSKLRRN-VNGDVTQQSFVYFRQGFREMKSYDesSQRKREPKPETRCGC 196
5******************999.8888***************9998855667777888888888 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.0E-6 | 134 | 196 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 196 aa Download sequence Send to blast |
MFVEIGGCGT KVVGVAIGPV HSQVEECDGD EERVDDLQCK GISQQTQVHF GSTIDCPPQA 60 PLIVVMIYDN ETYEFDKSMD MDFEVDDFFD DNFYENWDGR SIDGIADLDS LNLKSLTVDE 120 IKLLHFPDLN VAFSFYNFYA KMNRISARRS KLRRNVNGDV TQQSFVYFRQ GFREMKSYDE 180 SSQRKREPKP ETRCGC |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.PJ0LD |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020982272.1 | 2e-69 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | A0A444YCY6 | 3e-62 | A0A444YCY6_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3613 | 6 | 39 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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