PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.NM8GI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25208.8 Da PI: 7.1637 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.8 | 3.3e-42 | 55 | 154 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp + p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+++ Araip.NM8GI 55 PCAACKILRRRCVEKCVLAPYFPPTGPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQ 152 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Araip.NM8GI 153 AE 154 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.926 | 54 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-42 | 55 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEYKLNSSSS IPIIHVPTKI SNSPPPPSSS PPNSQSQSPI SSAPPSPPPP VVVSPCAACK 60 ILRRRCVEKC VLAPYFPPTG PLKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN 120 ARIRDPVYGC AGAICQLQKQ VSELQAQLAK AQAELVNMHC QQTNLVALIC MEMSTSNTHQ 180 SSHQEQQLQH HMMMIQPQNN NNNNNHVDMS CFIDDNNLAS AWEPEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 46 | 166 | 2 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 46 | 166 | 2 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.NM8GI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016177436.1 | 1e-168 | LOB domain-containing protein 1-like | ||||
Refseq | XP_025629840.1 | 1e-168 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-70 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A445AXW8 | 1e-167 | A0A445AXW8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004307415.1 | 2e-93 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-58 | LOB domain-containing protein 1 |