PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.N6BRL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 114aa MW: 13297.7 Da PI: 8.5121 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 64.6 | 2e-20 | 25 | 103 | 131 | 214 |
GRAS 131 aLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214 +L++Rp+gpp+l+iTg++ +ke l ++++rL + e+l++pf+fn v ++le+l++e+++vk++ ala+ ++lqlh+ll Araip.N6BRL 25 TLSARPKGPPHLKITGIHW----KKEILDQIAHRLIEEVEKLNIPFSFNH-VFSKLESLDFEKFSVKTEKALAITSILQLHSLL 103 599****************....9**************************.799***************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.915 | 1 | 114 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.1E-18 | 25 | 103 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
MVMVFEVLTR KLFYEIFFMD CTPPTLSARP KGPPHLKITG IHWKKEILDQ IAHRLIEEVE 60 KLNIPFSFNH VFSKLESLDF EKFSVKTEKA LAITSILQLH SLLVWDDKAV EKKS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.N6BRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187875.1 | 2e-40 | scarecrow-like protein 3 | ||||
Refseq | XP_020973780.1 | 2e-40 | scarecrow-like protein 3 | ||||
Refseq | XP_025642723.1 | 2e-40 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 4e-30 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A151TLX3 | 2e-38 | A0A151TLX3_CAJCA; Scarecrow-like protein 3 | ||||
TrEMBL | A0A445A7K8 | 3e-38 | A0A445A7K8_ARAHY; Uncharacterized protein | ||||
STRING | XP_007131568.1 | 1e-38 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-32 | scarecrow-like 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|