PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N3PSA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 293aa MW: 32276.8 Da PI: 8.83 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Araip.N3PSA 122 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 176 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.7e-41 | 122 | 212 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke +eLr +lk Araip.N3PSA 122 RKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELR-ALK 212 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-18 | 106 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-18 | 108 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 118 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 120 | 182 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-15 | 122 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.36E-15 | 122 | 179 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.6E-11 | 178 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.7E-26 | 178 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MELALSLGEA PKSFNLLDNT SKLPNNKDPV GFCIALGAAA SSAGKSSEEE RRGSSDPPVQ 60 LDLLPSTPFX XXXXXXXXXX XXXNGGDGGG GAAAMMRSRR DVEGGEGNDR GTSDDDENGS 120 TRKKLRLSKE QSAFLEESFK EHTTLNPKQK LALAKQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCEYLKRC CDTLTEENRR LQKELQELRA LKTSQPFYMQ LPATTLTMCP SCERVATNTA 240 ANNNDASQIA SALSLSNKPR ILPFPNTQAH PPPAQKAHQS SSSSFATLFR LFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | TRKKLRL |
2 | 170 | 178 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N3PSA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207437.1 | 1e-164 | homeobox-leucine zipper protein HOX11 | ||||
Refseq | XP_025662745.1 | 1e-164 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 7e-79 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A444YH98 | 1e-163 | A0A444YH98_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G16790.1 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-65 | homeobox from Arabidopsis thaliana |