PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.MZ01X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 40706.9 Da PI: 10.2291 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.4 | 2.2e-31 | 298 | 356 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Araip.MZ01X 298 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHPK 356 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.9E-16 | 254 | 294 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 284 | 356 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 291 | 357 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-27 | 294 | 356 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 296 | 356 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 298 | 355 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEEVEEANRA AVESCHRVLT VLSQPQDQVH YRNLMVETGE AVVRFKKVVS LLSNSLGHAR 60 VRKHKKLQVP FSQSILLDSP ICTRKKHQSK YLKFPQADFH DNSAQELGLT VGKSLSLVAK 120 PALELSSNGN GNGKSPLQLA QQLSSTHYHI LQQQQQQQRA LLLHHQQQQQ QMKHQAEIMY 180 RRNNINNSNN CSSNNNSVIN LNFDNSSSCT PTMSSTRSFI SSLSIDGSVA NVEGSAFHLI 240 GAARSSDQNS QQHKRKCSAR GDEASGGKCH CSKKRKHRVK RSIKVPAISN KLADIPPDDY 300 SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLEE PSMLIVTYEG EHNHPKLSTQ 360 SANA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 289 | 354 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 275 | KRKCSARGDEASGGKCHCSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.MZ01X |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375352 | 1e-132 | EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204721.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_025658462.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-117 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A445CKA5 | 0.0 | A0A445CKA5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 8e-78 | WRKY DNA-binding protein 21 |