PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.M6U8Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARR-B | ||||||||
Protein Properties | Length: 680aa MW: 74609 Da PI: 6.1006 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.8e-28 | 214 | 267 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F+ av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Araip.M6U8Q 214 KPRVVWSVELHQQFMAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 267 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.2 | 5.8e-26 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+ y ev+ ++ +e+alell+ ++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + + + + + Ga Araip.M6U8Q 38 VLVVDDDPTCLMILEKMLKACLY-EVTKCKCAEAALELLRGNKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKHVVMKGVTHGAC 132 89*****************9999.***************777778**********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + Araip.M6U8Q 133 DYLIKPVRIEALKN 146 **********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.9E-177 | 14 | 672 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 4.13E-35 | 35 | 156 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.6E-41 | 35 | 180 | No hit | No description |
SMART | SM00448 | 6.0E-31 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.787 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.7E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.21E-28 | 39 | 151 | No hit | No description |
PROSITE profile | PS51294 | 10.888 | 211 | 270 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-20 | 211 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-30 | 213 | 272 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 214 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 216 | 266 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MNLSNVKGST MSTPSSSGSH LRSTGDAVSD QFPAGLRVLV VDDDPTCLMI LEKMLKACLY 60 EVTKCKCAEA ALELLRGNKN GFDIVISDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDGK 120 HVVMKGVTHG ACDYLIKPVR IEALKNIWQH VVRKRKTGWR DPEQSGSIDE GDRQQKVSDD 180 ADYSSSANEG KSSKKRRDEE EDADERDDSS TLKKPRVVWS VELHQQFMAA VNQLGIDKAV 240 PKKILELMNV PGLTRENVAS HLQKYRLYLR RLSGVSQQQN NLNNSFMNPQ DPTFGSTSIN 300 GIDLQALSVA GQLPAQSLAK LQAAGLGRST AKPVMSMPLV EQRNLFSFES PKLRFGEGQM 360 QHLNTNKPIN LLHGIPTNME PKQLANLHQS AQSLGNLNMR INASVAQRSP LLMQMGQSQP 420 RGQMIGENGS HVNQLPTSLL QPTVPNRISN GVIRNGIASS SNINAAYNQV PQSSSFLNFP 480 MNQTNEMSVR SFPLGSHPGI SNITTKGMLQ EEVTSGIKGS SGFVPNYDMF NELQPQKSQD 540 WDLTTAGLTY DATQHSNHVQ GNTDVSVSPS VLVHPGFTSI QQTGQNRDTT SSMGKDMFSI 600 GEGMDQGNLQ SISQPQNPLL IDNSVRVKAE RVPDASSQTN FFPEQYGQED LMSALLKQEG 660 IGLAENEFDF DGYSLDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-22 | 213 | 273 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.M6U8Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016197903.1 | 0.0 | two-component response regulator ARR2 | ||||
Refseq | XP_025646538.1 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A444WPK3 | 0.0 | A0A444WPK3_ARAHY; Two-component response regulator | ||||
STRING | GLYMA15G15520.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |