PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.M2G3P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29492.2 Da PI: 6.6094 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.5 | 6.2e-25 | 79 | 168 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ gkw+vtk+++eH+H+l+ Araip.M2G3P 79 LYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLM 168 799***************************************99883333.2448899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.3E-22 | 79 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDHQSGQGFD SDDSDLDIQV EISRRLGKVE DGFPKDMELC AGEEEKFIEQ SVADISADGE 60 ALEPFIGMEF NSREEARELY IAYGRRIGFT VRIHHNRRSR VNNQVIGQDF VCSKEGFRAK 120 KYVHRKDRVL PPPPATREGC QAMIRLALRD GGKWVVTKFV KEHTHKLMSP SKVPWRGSGK 180 HLVSEDEKDK RIRELSLELY NERQKYKRRC AAYEEQLNNI LNYLEKHTEH MSEKVADIVR 240 SIREIEEEKA DSDI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.M2G3P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171103.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171104.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171106.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171107.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171108.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171109.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_016171110.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964200.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964201.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964203.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964204.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964205.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_020964206.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_025671943.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
TrEMBL | A0A4P1RED7 | 1e-159 | A0A4P1RED7_LUPAN; Uncharacterized protein | ||||
STRING | XP_007150429.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 9e-41 | FAR1 family protein |