PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KD3S1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 583aa    MW: 64539.6 Da    PI: 6.9464
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KD3S1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.6e-23123224199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ 
  Araip.KD3S1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NIVAKDVHGNCWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFL--RAKDGD 216
                  89*****************************97656666..6************************************************..348899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.KD3S1 217 LCVGIRRA 224
                  9****997 PP
2Auxin_resp1081e-35248325783
   Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  ++ +FevvY+Pr s++eF+vk++ v++a+kv+++ GmRfkm fetedss++++ +Gt+++v+ ldp++WpnS+Wr+L+
  Araip.KD3S1 248 NGRPFEVVYYPRGSSPEFCVKASVVRDAMKVRWCSGMRFKMPFETEDSSRISWfMGTISSVQLLDPIHWPNSPWRLLQ 325
                  789*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-37117225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-30118224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.17E-21122223No hitNo description
PfamPF023621.1E-21123224IPR003340B3 DNA binding domain
SMARTSM010191.4E-21123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901123225IPR003340B3 DNA binding domain
PfamPF065073.9E-31248325IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MFGESSGKWL DSELWHACAG SMVQMPPLNS KVLYFPQGHA EHAHGGKVDF RTRIPSFIPC  60
WLSGIKYMAD SDTDEVFVKL FLTPLTQENT NALLMDLEDG GDDCGNNNGG VVEGGHQEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QNIVAKDVHG NCWKFRHIYR  180
GTPRRHLLTT GWSNFVSQKK LVAGDSIVFL RAKDGDLCVG IRRAKKVAVG GGEVSVSSVV  240
EAVSFGVNGR PFEVVYYPRG SSPEFCVKAS VVRDAMKVRW CSGMRFKMPF ETEDSSRISW  300
FMGTISSVQL LDPIHWPNSP WRLLQVVWDE PELLQHVKCV NPWLVELVSD IPTYHLSPFS  360
PTRKKPRFLH NQDFHLINNQ LPIMPGFPSN YSYSNDNHLV MNHSSKSLLM NIQENNSIAG  420
IQGARHAQLL DLSPSDYPFF NNLPSQSQSH NMNLISPPYC GTYKNSNADI SCLLSVGNSS  480
HNLKEEHNEE VKSSSPPSHI FLFGQLIHTE QHCSNGGSSS SNGNNSSDEG TLLKMKSNNA  540
SELHLNSSPV EKNPSSNGGS PWYKDQHKSG LGTENVNLLC LAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-791034651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KD3S1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204505.10.0auxin response factor 18
RefseqXP_020959061.10.0auxin response factor 18
RefseqXP_025657181.10.0auxin response factor 18
RefseqXP_025657182.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A444XBI80.0A0A444XBI8_ARAHY; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3029722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-162auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]