PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JY10U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Whirly
Protein Properties Length: 237aa    MW: 26071.9 Da    PI: 9.5652
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JY10UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly197.22.3e-61621981137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  svyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydWe+kq+falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+++P
  Araip.JY10U  62 SVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKP 159
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++   G+fv+l+v n+l+++++++svPv+ aefav++++
  Araip.JY10U 160 HASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTA 198
                  *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.6E-7450215IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.49E-6454216IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.1E-5863197IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLKLSRLLPS ISGSSPRLLE PLSFTKPDPR DCLRHSAAFS TATNNKYAAK GYTSNRIFAP  60
YSVYKGKAAF SLSPCLPTFT KLDSGAVVVD RRGSMMMIFM HSIGERKYDW ENKQRFALSA  120
TEVGSLISMG PQDSCEFFHD PSMLSSNAGQ VRKSLSIKPH ASSNGYFVSL TVVNNLLNTK  180
DYLSVPVTTA EFAVMKTACS FALPHIMGWD RMTHQSGGTV GLQSKVEPPA LDLEWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A4e-86542138167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B4e-86542138167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C4e-86542138167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D4e-86542138167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.JY10U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205321.11e-178single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
RefseqXP_025662814.11e-178single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0342e-92WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A444YKS31e-177A0A444YKS3_ARAHY; Uncharacterized protein
STRINGXP_007147230.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-90WHIRLY 2