PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.JC7Y8

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 452aa MW: 52671.7 Da PI: 7.0455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.JC7Y8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.6e-17	172	263	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk+ F r+sk +++ n it++ fvC +e +re+++ + +++++++++etr gC+a++ v+ + +++w +t +++ nH la Araip.JC7Y8 172 SFYNLYAKMNRFAARRSKLRHN-VNSDITQQSFVCFREEFRETKSYDesSQRKHEPKPETRYGCQAEIYVHVHIdTERWIITYFQEACNHVLA 263 5******************9.6666***********9998855666677999*********99889************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	172	263	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MNTGVSFLDL EAELVRMGLI KIRPACFCWI KIKSDIHDTG MWKSELVSTF DELFFGVDHR 60 FYPRHLPRPK QERKPPLTIM TSLLRVKHYQ LIYPTMEMSD DGNYFCDAKE PLSDKGLDMD 120 SEADDFFDDN FYENWDGRSI DGISDLGSFN LNSLMVDEIK MLHFPYLNAA FSFYNLYAKM 180 NRFAARRSKL RHNVNSDITQ QSFVCFREEF RETKSYDESS QRKHEPKPET RYGCQAEIYV 240 HVHIDTERWI ITYFQEACNH VLANELTFML PGHRKMDAGA INQMNMMLKV RIKTPQIYAS 300 FVNTLGDFQN VPLLKRGMMT SRCEGLHSML GKFVHSRHNL RDFVKQFFCC ISQMRSRKCQ 360 TDLVSVVDNL GDVDKGVHLE GLIMHTHTNM IESLGILLCD HVVTILVHLD FTEIPNHLFL 420 ARWSKNARSR VRVLMDKGLF CWDSMAIVEI GC

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MNTGVSFLDL EAELVRMGLI KIRPACFCWI KIKSDIHDTG MWKSELVSTF DELFFGVDHR  60
FYPRHLPRPK QERKPPLTIM TSLLRVKHYQ LIYPTMEMSD DGNYFCDAKE PLSDKGLDMD  120
SEADDFFDDN FYENWDGRSI DGISDLGSFN LNSLMVDEIK MLHFPYLNAA FSFYNLYAKM  180
NRFAARRSKL RHNVNSDITQ QSFVCFREEF RETKSYDESS QRKHEPKPET RYGCQAEIYV  240
HVHIDTERWI ITYFQEACNH VLANELTFML PGHRKMDAGA INQMNMMLKV RIKTPQIYAS  300
FVNTLGDFQN VPLLKRGMMT SRCEGLHSML GKFVHSRHNL RDFVKQFFCC ISQMRSRKCQ  360
TDLVSVVDNL GDVDKGVHLE GLIMHTHTNM IESLGILLCD HVVTILVHLD FTEIPNHLFL  420
ARWSKNARSR VRVLMDKGLF CWDSMAIVEI GC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.JC7Y8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164131.1	1e-174	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025664444.1	1e-174	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YCY6	0.0	A0A444YCY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-08	FAR1-related sequence 5