PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.IN117
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 150aa    MW: 17532.4 Da    PI: 4.2409
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.IN117genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.32.1e-1287150164
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCka 64 
                  +fYn+YA   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+  rt+C a
  Araip.IN117  87 QFYNAYACWHGFVMRKDDVVRD-NQGRIICRQLVCNKEGWRNMRYLDlDDRSREARSLMRTKCPA 150
                  6****************99998.8888****************998877899999********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1087150IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MELYAAARCK IMSRNEDDVK NDSDNDLGDD FDYQPNAEDD GEDDDVDSLN FTSKSEQGCG  60
VKRIADLMVM VEDIWNLEFR TEDEACQFYN AYACWHGFVM RKDDVVRDNQ GRIICRQLVC  120
NKEGWRNMRY LDLDDRSREA RSLMRTKCPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.IN117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371771e-162HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953982.14e-82protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015965951.14e-82protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D7E13e-81A0A445D7E1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9653634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-10FAR1 family protein