PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.II3JP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 293aa    MW: 32468.1 Da    PI: 8.5556
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.II3JPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.3e-41176252278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  CqvegC  dls+ak+yhr+h+vCe hsk+p vl++g e+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+q+
  Araip.II3JP 176 CQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQP 252
                  **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33168237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.436173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-39174255IPR004333Transcription factor, SBP-box
PfamPF031109.8E-32176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEWNAKSLGQ WDWENLYSFN TKPTENSKLQ PTDWSMEADG EINVGLIYPS GGSACSGSEL  60
IHASSRSSKS ASMNSSSNGD SKASTTMFTF ERSQDDSTGK KELSKEEPVE NSPAPEPSSA  120
SGEPLLTLKL GKRLYFEDVC AGSDSKKPSS IDVPISSSNT GKKCKANSQN LQHPSCQVEG  180
CGLDLSSAKD YHRKHRVCES HSKSPRVLIA GFERRFCQQC SRFHGLSEFD DKKRSCRRRL  240
SDHNARRRKP QPEAVQLNTS PLSSSPYECK LERGKDSKPL PLLPFGHWLM RGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271762491184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.II3JP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122240.0KF312224.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196961.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020976043.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020976044.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_025645393.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_025645394.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029147758.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_029147759.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotA2X0Q68e-66SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z88e-66SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A444ZBK20.0A0A444ZBK2_ARAHY; Uncharacterized protein
STRINGXP_007163771.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-55squamosa promoter binding protein-like 2