PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.H2GQW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 392aa    MW: 43171.2 Da    PI: 7.4331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.H2GQWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16134179147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+ +v q+G+ +W++Ia+++  gR++k+c++rw++ 
      Araip.H2GQW 134 RGHWRPAEDAQLKALVSQYGPQNWNLIAEHLK-GRSGKSCRLRWFNQ 179
                      899****************************9.***********996 PP
2Myb_DNA-binding50.54.8e-16188229346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ +eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
      Araip.H2GQW 188 AFCEEEEERLLTAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 229
                      5669****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.763129180IPR017930Myb domain
SMARTSM007172.1E-14133182IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-27134227IPR009057Homeodomain-like
PfamPF002498.8E-16134179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-25135187IPR009057Homeodomain-like
CDDcd001673.30E-13137178No hitNo description
PROSITE profilePS5129425.475181235IPR017930Myb domain
SMARTSM007171.5E-12185233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-19188234IPR009057Homeodomain-like
PfamPF002497.0E-13188228IPR001005SANT/Myb domain
CDDcd001671.13E-10191228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMMSSQHFNN GGSDGGGRFF PSLPVPPSSF PLVVPPPPPS LSNTSGVVVM SHHHHHANGV  60
ENPELIMMGL QILSSSKWKM GTNNNSENKS LSLKIGDEED EIDGGEEREE GNSKGPCSSS  120
SNGGKIGHVK LCARGHWRPA EDAQLKALVS QYGPQNWNLI AEHLKGRSGK SCRLRWFNQL  180
DPRINRRAFC EEEEERLLTA HRMYGNKWAM IARLFPGRTD NAVKNHWHVI MARKQREQSS  240
MYRRRKPPPV FSPPSVEEGV VLLPPPKALE LTLSSNNNNV ASDDQLTISD ESVSTELTAP  300
TSFFHKIGQG VGGMNVGYEK FYGGWNNGNL KCVDQSNFSE SNNSSSEVSV SESVGTTNRS  360
YLSISGESEN HNIRNKINNM PAFIDFLGVG AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-331342344104C-Myb DNA-Binding Domain
1msf_C3e-331342344104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.H2GQW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016161900.10.0transcription factor MYB56 isoform X1
RefseqXP_025658266.10.0transcription factor MYB54 isoform X1
TrEMBLA0A445CS460.0A0A445CS46_ARAHY; Uncharacterized protein
STRINGGLYMA03G00980.12e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-70myb domain protein 105