PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.GK3PH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 291aa MW: 31473.7 Da PI: 7.9196 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.3 | 3.3e-30 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++dC ++p++ +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e Araip.GK3PH 4 SCNGCRVLRKGCSEDCSIRPCLewiksAESQANATLFLAKFYGRAGLINLINAGPNHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101 6*********************9999777889****************************************************************99 PP DUF260 94 lall 97 ++l Araip.GK3PH 102 AVLK 105 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.549 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKS AESQANATLF LAKFYGRAGL INLINAGPNH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGLPIT PINSELAESG 120 RGPPFKAHDI RHVSKPDNNT VTAASHETKR VKTRSRIKKP KVAEVAKRAS SHESSLSHER 180 VEAVATAAEG ESKEIESDVS VETTTTTVRF HDEPDSDAKG SGGSAEVCGN EVGLELTLGF 240 ETVSREHDVV VPMKKRRIDL KDFCGGVSSD NGSCKMELGL QFQAFNGSVL T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.GK3PH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016182188.1 | 0.0 | LOB domain-containing protein 40 | ||||
Refseq | XP_025680555.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 1e-100 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A444X9G1 | 0.0 | A0A444X9G1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G06280.1 | 1e-126 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-103 | LOB domain-containing protein 41 |