PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.G9Z4L
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 359aa    MW: 40593.6 Da    PI: 5.8945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.G9Z4LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
      Araip.G9Z4L 15 KGLWSPEEDEKLIRYMITKGEGCWSDIARNAGLQRCGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding47.54e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E++l+++++  lG++ W+ Ia++++ gRt++++k++w++
      Araip.G9Z4L  68 RGAFSLQEEDLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 111
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9651062IPR017930Myb domain
SMARTSM007175.5E-131464IPR001005SANT/Myb domain
SuperFamilySSF466895.86E-2814109IPR009057Homeodomain-like
PfamPF002492.9E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221669IPR009057Homeodomain-like
CDDcd001673.13E-111862No hitNo description
PROSITE profilePS5129424.02263117IPR017930Myb domain
SMARTSM007177.0E-1567115IPR001005SANT/Myb domain
PfamPF002496.6E-1468111IPR001005SANT/Myb domain
CDDcd001675.25E-1070113No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVKEKSNNNG SKQRKGLWSP EEDEKLIRYM ITKGEGCWSD IARNAGLQRC GKSCRLRWIN  60
YLRPDLKRGA FSLQEEDLII HLHSILGNRW SQIAARLPGR TDNEIKNFWN STVKKRLKLN  120
NNSTSSPNNS DSSEPNSIRD NNVVMGTTTT SNNNGIMHIN DHHHHHQDLM TMSMCMDNSS  180
SSTSSSTMHT HHHAMVFGDP FSMVTNNNNN HYEMATGVAG FHGAMAGDLP LENSFHGGDY  240
GRMLDEESTD KMGLESDLSL PPLESSIRST EEIIIINNAS SIDDMKSHNN HFNNNNNTNN  300
DSCFKNTDNQ VLNNNNYSNE EDLFGFGNHG QVENLRMGEW DFEGLMQDIS YFPSLDFQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26151177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.G9Z4L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150445e-42AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169441.10.0transcription factor MYB46
RefseqXP_025674063.10.0transcription factor MYB83
TrEMBLA0A444Y1I00.0A0A444Y1I0_ARAHY; Uncharacterized protein
STRINGGLYMA19G05080.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-68myb domain protein 83