PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.FR0NA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 116aa MW: 13479.5 Da PI: 10.8712 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.8 | 1.2e-20 | 2 | 61 | 75 | 128 |
NAM 75 nratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 nr+tksgyWkatg+dk+++s+ +++ vg++ktLvfy+g++p+g++t+W+m eyrl Araip.FR0NA 2 NRITKSGYWKATGSDKRIISTscnnnnNSNIVGIRKTLVFYHGKSPNGSRTHWIMREYRL 61 89*****************998887777777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.319 | 1 | 87 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-25 | 2 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-10 | 2 | 61 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MNRITKSGYW KATGSDKRII STSCNNNNNS NIVGIRKTLV FYHGKSPNGS RTHWIMREYR 60 LVTTPSNSSQ KYVEDLGNWV LCRIFKKKRS IESQHHMVNN KINNVVEILI IFHNVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-22 | 2 | 92 | 93 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.FR0NA |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025672115.1 | 3e-73 | NAC domain-containing protein 83 isoform X1 | ||||
Swissprot | Q9FY93 | 4e-24 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A444XWL6 | 7e-72 | A0A444XWL6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G01280.1 | 9e-35 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 1e-23 | NAC domain containing protein 32 |
Publications ? help Back to Top | |||
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