PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.EC4LT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 21813 Da PI: 8.9987 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.2e-15 | 80 | 170 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f vl++s+v +s+++ p k + ++ + e t+ g+sW++ ++ +gr ++ +GW++Fvkan L egD +vF+l+ +s+++ v+ v Araip.EC4LT 80 FHVVLSKSHVRRSCLMG-PSKDLIDIlP-SA-E--VPTVLKCGGESWDMVYR-GHAPGRKFFDGGWRKFVKANCLVEGDACVFELMANSDEKIVFEV 170 66788888999888555.8888877741.22.2..34777889********3.45566799*************************99888877765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.82E-17 | 75 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-18 | 75 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-17 | 78 | 174 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 79 | 176 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-9 | 80 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 80 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
SLQQHRKHRE VVGGAFRKFW RVLPVDNVTP LPTASSMSSP GSSSTSRVSV EGQAPLPKPA 60 DPAANLSSNE IAPLSRNPFF HVVLSKSHVR RSCLMGPSKD LIDILPSAEV PTVLKCGGES 120 WDMVYRGHAP GRKFFDGGWR KFVKANCLVE GDACVFELMA NSDEKIVFEV QILRGDLPEV 180 FFKRDRIGAS EQKPIVID |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.EC4LT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016191585.1 | 1e-116 | B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_025640998.1 | 1e-116 | B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A445AB11 | 1e-107 | A0A445AB11_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 5e-11 | related to vernalization1 1 |