PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.E8AYR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 531aa    MW: 61299.6 Da    PI: 5.4197
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.E8AYRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-18103188283
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                  fYn YAk+ GF  r+ +s+++  n+e +++ fvC ++g+r+ +  +    ++ +r++++etr+gC+a+++v+ +k +g+w vt +++
  Araip.E8AYR 103 FYNLYAKMNGFAARRYRSRRN-LNNELIQQSFVCFRQGFRKARICDgvevADWKREPKPETRCGCEAEMRVHIDKdTGRWIVTYFQE 188
                  9******************99.6666*****************99999998999*******************999*******9983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-15103188IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.027287323IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-4298325IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
RSEVEESEYY SEELVRAPDP VEVLHVDGEG SNVGEEGSEG FEGDEGFEEE SEIHDEFGDG  60
FYDNWEERAI NEIADLGCMN LKEITVEEIK SLHFPDREVA FLFYNLYAKM NGFAARRYRS  120
RRNLNNELIQ QSFVCFRQGF RKARICDGVE VADWKREPKP ETRCGCEAEM RVHIDKDTGR  180
WIVTYFQEFV HSRHNLKDFV EQFFRCISQM RSREAFSDLQ STVGDMVLQS PLRSLERSAA  240
SVLTREIFLI FRPMLSRACT LKVRSCTFTA CSDIYSLFRS GDSAREWRVS HYRNGSFFKC  300
SCMRMETLGI PCDHIIAVFH HLDITEMPAS VILERWSKDA RSRVRAFMEK GPFCWDSMVT  360
CRNWMLNDLC RELCVLASAQ VDDFVDVTGK LRNEILHLKS KRVSPIGEGT DPLVSSTLED  420
CVRDPQVLRH HKRRKFGVGR QPSSKGIKRC GICRAVGHNR LSCSQRHTHG QGHTAVDSGT  480
QRRAVYEEAD YGDYEDSWEE CHLWSGHDAS ENHEDESCEE DHYLDVSLSE P
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.E8AYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961416.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445D9540.0A0A445D954_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-14FAR1-related sequence 5