PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.E56RB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 18167.4 Da PI: 8.4249 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 2e-15 | 8 | 95 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 kv ++ +l+s++l++p +f++++gg+ s + l ++g sW+v l +k ++++++ +GW eFv+ + +g + F+++g+s+f v++f Araip.E56RB 8 KVILT-TTLQSKQLRVPDNFLRKYGGE--LSSFVNLSVPDGSSWRVGL--KKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNF--SVHIF 95 44444.4456667***********988..6778***************..*********************************99999..88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-23 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-22 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.10E-17 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 12.647 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-13 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-13 | 13 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MPRPSFHKVI LTTTLQSKQL RVPDNFLRKY GGELSSFVNL SVPDGSSWRV GLKKVDNKFW 60 FIDGWAEFVQ RYSIGVGYLL AFRYEGKSNF SVHIFNLATA EINYQSPTRS SNEGSYFANC 120 LKIFEEMEDE DFTESKPALQ NLFNGSKLNS VNWGEGRNA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.E56RB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016187087.1 | 1e-112 | B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 4e-49 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A445A994 | 1e-109 | A0A445A994_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G13210.1 | 9e-78 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-51 | B3 family protein |
Publications ? help Back to Top | |||
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