PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.DNI71 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 849aa MW: 93786.1 Da PI: 4.4456 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Araip.DNI71 20 HVCNKCGWPFPNPHPSAKHRRAH 42 79*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MDSEDQRRTQ TQGNENHGVH VCNKCGWPFP NPHPSAKHRR AHKKNCGTIE GYKLLVSEGQ 60 THLNLSDDEH FSDNDHKTQA AEESPSISKS RNDIVAQTPK ILQSERNDDC NLLELQDLKT 120 DDSFALASDS NTCRSEAMSD VLLDNKIYVD GTKGTTLKEK DEIKPDRDMF EIVESSDSTI 180 GRTFEGVSGA VTEVVSLKSQ VTDGAFILKE NNGSGFPSVM PKDLFLEAES AQSMNDSIDG 240 IRVESEHMTE LATSGDIMIS REREEVNVEM LTFPSCDDRP DVAHPHIEYE CHEPVVSQNS 300 ASLHLSKALE QGHDGLKDSV NKENDFLINQ GQLSKKGDLL SQDMHSLNSN MKKQVNCELV 360 AAEMHAEECI EVFNGESNRR LHETGAFMND MKTEKNENHV VHFSEEQVSN DAHKNSQQID 420 VPKGSLMAAS DENACDASFV SATSQTTAVI IRDNTTHHEG NITSIAVDDE CRRANIENDT 480 GICMNTLQSS NVLSEINSSS ICNEYGVEMG KFEQSDIVDA QHAESGIVKD ATLPDIFEST 540 ILSEVVIDGP KGTPKDIECS NRSPLSCTHE EIKEEEINSI DRSNEYSNIV ASTSAAPHQT 600 QDEELLHKAT EGIDLIEDSN RTGRDHSLNI EPSYQCVSPV EDTQVGQHGT KVPGVVAVPI 660 QDQRDLPVQS DVQATNEAEA IASTDLSMST ETEKSNLKYP EASEEQQYEK SEMFEPPSFM 720 TLVEPGLMLG PKSAPEVETD PNKQKPDSNS SQAAWFPTLT HIANDKKSKS PISEKDSVNQ 780 KRVRVTEDNG SGLTTVNSIL GCESPAMQIM NRESTEEWNS PADITRKKKK DKSRSHWIQL 840 LCCSSVETR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 825 | 830 | RKKKKD |
2 | 825 | 831 | RKKKKDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.DNI71 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196920.1 | 0.0 | uncharacterized protein LOC107638253 isoform X1 | ||||
Refseq | XP_025645453.1 | 0.0 | uncharacterized protein LOC112740940 isoform X1 | ||||
TrEMBL | A0A444ZBP2 | 0.0 | A0A444ZBP2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G11280.2 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5051 | 17 | 19 |