PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.DHX2R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 347aa    MW: 39115.9 Da    PI: 4.4423
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.DHX2RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-12180223654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Araip.DHX2R 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223
                  589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15176236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-5181227No hitNo description
Gene3DG3DSA:4.10.280.104.8E-15181236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0014273314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELSQLGFLE ELMLAPRKDT WTSSTSNDVF SPSSWNYFDP FLDTPSSSSF PPSAFSPPPP  60
DQRFIIDCPF TTSYPFPDDA FTMPDLDSSY TTKYEYDDAP PPPLPHNHQD VDDDNDNNNN  120
NNNPSVLEDE DAGYLGCKVE EQAVVDVQVH VPVVFNMGMC GIGEKKNKSK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEEVEEGTS  240
QQNLLGVSKE LKPNEAMVRN SPKFDVERRD KDTRISICCA TKPGLLLSTV NTLEALGLEI  300
QQCVISSFND FSMQASCSEV AEQRNCVDPE EIKQALFRNA GYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.DHX2R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016190307.10.0transcription factor bHLH61
RefseqXP_025638681.10.0transcription factor bHLH61
SwissprotQ9LSL14e-91BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A444ZVT80.0A0A444ZVT8_ARAHY; Uncharacterized protein
STRINGGLYMA01G02390.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-93beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]