PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.D9D8Y
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 380aa    MW: 42355.9 Da    PI: 4.6538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.D9D8YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
      Araip.D9D8Y 16 KGPWSPAEDLKLIAFIQKHGHENWRALPKQAGLMRCGKSCRLRWINYL 63
                     79********************************************97 PP
2Myb_DNA-binding53.74.8e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++k +G++ W++Ia++++ gRt++++k+ w+++l
      Araip.D9D8Y  69 RGNFTAEEEETIIKLHKAMGNK-WSKIASRLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24766IPR009057Homeodomain-like
PROSITE profilePS5129415.0491163IPR017930Myb domain
SuperFamilySSF466898.24E-3014110IPR009057Homeodomain-like
SMARTSM007173.2E-121565IPR001005SANT/Myb domain
PfamPF002491.8E-141663IPR001005SANT/Myb domain
CDDcd001676.52E-101863No hitNo description
PROSITE profilePS5129425.69864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2767118IPR009057Homeodomain-like
SMARTSM007176.8E-1668116IPR001005SANT/Myb domain
PfamPF002491.9E-1569114IPR001005SANT/Myb domain
CDDcd001674.29E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKKGPWS PAEDLKLIAF IQKHGHENWR ALPKQAGLMR CGKSCRLRWI  60
NYLRPDVKRG NFTAEEEETI IKLHKAMGNK WSKIASRLPG RTDNEIKNVW NTHLKKRLTA  120
AKSSDSRADN ANDGSKIESS VTSPSSSSSE SFFSNETPKT NNNNPCNETN DHISQIDDDD  180
QDSGGKLLQE VVGITEETKG SSNSSSSTSL SSSLENKKHD EDQQQLVSPT LLNCVGPYDV  240
DVTLEEVDKP NNNNLETKED CDFWKMLDNI ESFLSSNEAS PPPPQCQTSP PNLVHQDDDE  300
AMMMMMWSHE FENVLGTVVG EATTKGSNNK AHQQEIIMDP SNDVFDLDLV TRPPEPDQLE  360
SELDLGYIQL WPSLPPNTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26161187108B-MYB
1mse_C8e-27161184105C-Myb DNA-Binding Domain
1msf_C8e-27161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.D9D8Y
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169279.10.0transcription factor MYB58
RefseqXP_025674104.10.0transcription factor MYB58
SwissprotQ6R0A61e-76MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A444Y0A90.0A0A444Y0A9_ARAHY; Uncharacterized protein
STRINGXP_007149313.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-75myb domain protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]