PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.D6Q60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 185aa MW: 20872.9 Da PI: 6.305 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.6e-08 | 23 | 66 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e d+ + +a + + +W++Ia+ ++ g+++ ++++r+ Araip.D6Q60 23 HWTREQDKVFERALLFVPEDlpdRWDKIAEQVP-GKSAVEVRDRY 66 6*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.608 | 16 | 70 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 18 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-7 | 20 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.05E-12 | 22 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-7 | 23 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-7 | 24 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MFQETTAVAT RWGTEAVEVR MNHWTREQDK VFERALLFVP EDLPDRWDKI AEQVPGKSAV 60 EVRDRYEALV RDVYEIDSGR VEVPRYSDDS AGSGGGGGGL YRTPTQVASH AQKYFLCQNS 120 GKKERKRSSI HDITTVDSNS VPVPVDQNWV APPQQEMQQH QQHQHFNPHN HVGAGGFGYS 180 NYGGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.D6Q60 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016173664.1 | 1e-110 | transcription factor DIVARICATA | ||||
TrEMBL | A0A444XUT6 | 2e-99 | A0A444XUT6_ARAHY; Uncharacterized protein | ||||
STRING | AES84368 | 4e-66 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-37 | MYB family protein |