PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CZ0IQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 487aa    MW: 55051.3 Da    PI: 4.7947
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CZ0IQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.82e-381773001127
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+e L++cA+ ++++d+e +++l+++l++++s +gdp+qRl ay++e L ar+a ++s++ykal++se +     e l+++++++e++P++kf+++ a
  Araip.CZ0IQ 177 LKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLVARMACTGSKIYKALKCSEPT---GNELLSYMHVLYEICPYFKFGYMSA 271
                  5789*****************************************************************9...99*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpa 127
                  N aI ea+++e++vHiiDf+isqG+Q pa
  Araip.CZ0IQ 272 NGAIAEAMKEESHVHIIDFQISQGTQVPA 300
                  **************************886 PP

2GRAS219.61.6e-67301487187374
         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  ++++le+L+++++Ea+aVn++++lh+++desv++ ++rd++L+l k+lsPkvv++veqe ++n+++Fl rf+ +l+yy a+f+s++a lpre++eri+
  Araip.CZ0IQ 301 SEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERIN 398
                  6899********************************************************************************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vE+++l+re+vn+vaceg+er+erhe l+kWr+r+++aGF p+pls+++++++k+ll+ ++++ y++ee++g+l+lgW+++ L++ +aWr
  Araip.CZ0IQ 399 VEQHCLAREVVNLVACEGEERVERHELLNKWRRRFTAAGFAPYPLSSFVNASIKTLLESYPGH-YTLEERDGTLYLGWMNQVLIVSCAWR 487
                  *************************************************************77.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.162151287IPR005202Transcription factor GRAS
PfamPF035147.0E-36177300IPR005202Transcription factor GRAS
PROSITE profilePS5098527.486288468IPR005202Transcription factor GRAS
PfamPF035145.6E-65301487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MQTSQEHELP YGSGRFYIEP AQNPESYCFP SSENLENYSS SDNSNHATYP LVKISDPYCT  60
LESASTSNIP CQNSASTANF SPNGSPVSKL EPKSHVLRPQ HSLETTNGSP EINSCLTHDL  120
DDLRDKIREL ETAMLGPDTN TLNMYDIVVP EPEEPDSFLV AAEKWKKTME IISRGDLKEM  180
LYTCAKSMAE NDMETTDWLI SELRKMVSIS GDPLQRLGAY MLESLVARMA CTGSKIYKAL  240
KCSEPTGNEL LSYMHVLYEI CPYFKFGYMS ANGAIAEAMK EESHVHIIDF QISQGTQVPA  300
SEVQLEDLEL RTNEAVAVNF AIMLHHVPDE SVTSLNPRDR LLRLAKNLSP KVVTLVEQEF  360
STNNAQFLPR FMVTLNYYLA VFESIDAVLP REHKERINVE QHCLAREVVN LVACEGEERV  420
ERHELLNKWR RRFTAAGFAP YPLSSFVNAS IKTLLESYPG HYTLEERDGT LYLGWMNQVL  480
IVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3518448626378Protein SCARECROW
5b3h_A4e-3518448625377Protein SCARECROW
5b3h_D4e-3518448625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CZ0IQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020972791.10.0LOW QUALITY PROTEIN: scarecrow-like protein 21
SwissprotQ9S7H51e-146SCL21_ARATH; Scarecrow-like protein 21
TrEMBLA0A151QXN40.0A0A151QXN4_CAJCA; Scarecrow-like protein 5
STRINGGLYMA02G46730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.11e-148SCARECROW-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]